Non-Coding RNA Search

Ss1.1-Spl1-SPL010027A05.5

Sequence:


               
               TGGGGCAGCCACTGCTTACACTGAAGAGGAGGACGGGAGAGGATTTTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTATGTGTGACTGTGTGTGTGTGCGTGTTTTCTTTTTAGTGGTGCTG
GAGGGAGGGTGCTAGCAGGGCCAGCCCTGAACCCGCTGGACAGAGCTACAGACCCATGGG
GCCTGGCAGTGCCCGCTGAGAGAGGGAGAAGACAGCAGAGGGGTTGCCAAGGCACCCTCC
AAACCCCAGATCATGTCTCTGTGGGGTCTGGTCTCCAAAATGCCCCCAGAAAAACTGCAG
CGGCTCTATGTCGACTTTCCCCAACACCTGCGGCATCTCCTGGGCGACTGGCTGGAGAAC
CAACCCTGGGAGTTCCTTGTCGGCTCAGATGCCTTCTGCTGCAACATGGCCAGTGCCCTG
CTATCTGCCACTGTCCAGCGCCTTCAGGCCTTGGCTGGAGAGCAGGGGGAGGGGAGTACC
ATCTTGCAACACATCAGCACCCTGGAGGTGGGGGCAGAAGGGGAGGGGACAAGGCTGGGG
TGGGGCCTGGAGTGGAGCTGGGGTGAGCCTTGGATGCTAGAAGAAAATTGGCTGGATGCT
GGAAGCAAATTGGTATTCCTGTGGTTAGCTGTTAGCTAGCATGCAAATTAGATTTTAAAA
GCATGCAAATGCATGAAAACTTCTGGAGCACAGCTGTGCTGCCTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGCAGCCACTGCTTACACTGAAGAGGAGGACGGGAGAGGATTTTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTATGTGTGACTGTGTGTGTGTGCGTGTTTTCTTTTTAGTGGTGCTG
GAGGGAGGGTGCTAGCAGGGCCAGCCCTGAACCCGCTGGACAGAGCTACAGACCCATGGG
GCCTGGCAGTGCCCGCTGAGAGAGGGAGAAGACAGCAGAGGGGTTGCCAAGGCACCCTCC
AAACCCCAGATCATGTCTCTGTGGGGTCTGGTCTCCAAAATGCCCCCAGAAAAACTGCAG
CGGCTCTATGTCGACTTTCCCCAACACCTGCGGCATCTCCTGGGCGACTGGCTGGAGAAC
CAACCCTGGGAGTTCCTTGTCGGCTCAGATGCCTTCTGCTGCAACATGGCCAGTGCCCTG
CTATCTGCCACTGTCCAGCGCCTTCAGGCCTTGGCTGGAGAGCAGGGGGAGGGGAGTACC
ATCTTGCAACACATCAGCACCCTGGAGGTGGGGGCAGAAGGGGAGGGGACAAGGCTGGGG
TGGGGCCTGGAGTGGAGCTGGGGTGAGCCTTGGATGCTAGAAGAAAATTGGCTGGATGCT
GGAAGCAAATTGGTATTCCTGTGGTTAGCTGTTAGCTAGCATGCAAATTAGATTTTAAAA
GCATGCAAATGCATGAAAACTTCTGGAGCACAGCTGTGCTGCCTCTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|58737045|dbj|BAD89431.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|58737045|dbj|BAD89431.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               99-208, - strand, RNAz p=0.583923

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-208, - strand, RNAz p=0.583923

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-208, gnl|bosTau2|chr5 (32571723-32571918)
               

               
               1-208, gnl|Hg17|chr12 (55791413-55791202)
               

               
               1-208, gnl|Mm7|chr10 (127144395-127144614)
               


               
               368-591, gnl|bosTau2|chr5 (32575357-32575574)
               

               
               368-591, gnl|Hg17|chr12 (55787794-55787552)
               

               
               368-591, gnl|Mm7|chr10 (127149072-127149304)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-208, gnl|bosTau2|chr5 (32571723-32571918)
               

               
               1-208, gnl|Hg17|chr12 (55791413-55791202)
               

               
               1-208, gnl|Mm7|chr10 (127144395-127144614)
               


               
               368-591, gnl|bosTau2|chr5 (32575357-32575574)
               

               
               368-591, gnl|Hg17|chr12 (55787794-55787552)
               

               
               368-591, gnl|Mm7|chr10 (127149072-127149304)

	1-208, gnl\|bosTau2\|chr5 (32571723-32571918)
	1-208, gnl\|Hg17\|chr12 (55791413-55791202)
	1-208, gnl\|Mm7\|chr10 (127144395-127144614)

	368-591, gnl\|bosTau2\|chr5 (32575357-32575574)
	368-591, gnl\|Hg17\|chr12 (55787794-55787552)
	368-591, gnl\|Mm7\|chr10 (127149072-127149304)