Non-Coding RNA Search

Ss1.1-Spl1-SPL010028H09.5

Sequence:


               
               ACATAACGGGCAGCGCGCACTCCGAGGCGGCTTCTCCGGAGCGCAGGCAGAGACCCGCCG
GCACTGCGAGCCTCGAGCACCCCGGGAGCCGAGTGCACCACGCGCCCCCTCCACACCCAC
CCCACGGCCGCTGAATGAGGCTTCTAGGCGCCCGCTCGCTGCCCGCAGCCCCCCGCCGGA
GGTCGGCCCGCTGAGGCGCGGCGGGTGCGCCGGCTGCCAGCGCGCTCACCTGCCCGCCTG
CGCGCCATGGGGCAGCCCGGGAACCGCAGCGTCTTCTTGCTGGCGCCCAACGGAAGCCAT
GCGCCGGACCAGGACGTCCCACAGGAGCGGGACGAGGCATGGGTGGTGGGCATGGCCATC
GTCATGTCGCTCATTGTCCTGGCCATCGTGTTTGGAAACGTGCTGGTCATCACAGCCATC
GCCAAGTTCGAGCGTCTCCAGACGGTCACCAACTACTTCATCACCTCCCTGGCCTGTGCT
GACTTGGTCATGGGCCTGGCGGTGGTGCCCTTTGGGGCCAGCCACATCCTCATGAAAATG
TGGACTTTCGGCAGTTTCTGGTGCGAGTTTTGGATTTCCATTGACGTGCTGTGCGTCACG
GCCAGCATTGAGACCCTGTGCGTGATCGCCGTGGATCGCTACCTTGCCATCACGTCCCCC
TTCAAGTACCAGTGCCTGCTGACCAAGAACAAGGCCCGGGTGGTCATTCTGATGGTGTGG
GTCGTGTCGGGCCTTATCTCCTTCTTACCCATTAAGATGCACTGGTACCAGGCCACCCAC
CGGGAAGCCTTAAACTGCTATGCAGAGGAGGCCTGCTGCGACTTCTTCACCAACCAGCCT
TACGCCATCGCCTCTTCCATCGTGTCCTTCTACCTGCCCCTGGTAGTCATGGTCTTCGTC
TACTCCAGGGTCTTTCAAGTAGCCAGAAGGCAGCTCCAGAAGATCGACAAGTCTGAGGGC
CGCTTCCACGCCCAGAACCTCAGCCAAGCGGAGCAGGATGGGCGGAGCGGGCCGGGACAT
CGGAGGTCCTCCAAGTTCTGCTTGAAGGAACACAAAGCCCTCAAGACGCTAGGGATCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATAACGGGCAGCGCGCACTCCGAGGCGGCTTCTCCGGAGCGCAGGCAGAGACCCGCCG
GCACTGCGAGCCTCGAGCACCCCGGGAGCCGAGTGCACCACGCGCCCCCTCCACACCCAC
CCCACGGCCGCTGAATGAGGCTTCTAGGCGCCCGCTCGCTGCCCGCAGCCCCCCGCCGGA
GGTCGGCCCGCTGAGGCGCGGCGGGTGCGCCGGCTGCCAGCGCGCTCACCTGCCCGCCTG
CGCGCCATGGGGCAGCCCGGGAACCGCAGCGTCTTCTTGCTGGCGCCCAACGGAAGCCAT
GCGCCGGACCAGGACGTCCCACAGGAGCGGGACGAGGCATGGGTGGTGGGCATGGCCATC
GTCATGTCGCTCATTGTCCTGGCCATCGTGTTTGGAAACGTGCTGGTCATCACAGCCATC
GCCAAGTTCGAGCGTCTCCAGACGGTCACCAACTACTTCATCACCTCCCTGGCCTGTGCT
GACTTGGTCATGGGCCTGGCGGTGGTGCCCTTTGGGGCCAGCCACATCCTCATGAAAATG
TGGACTTTCGGCAGTTTCTGGTGCGAGTTTTGGATTTCCATTGACGTGCTGTGCGTCACG
GCCAGCATTGAGACCCTGTGCGTGATCGCCGTGGATCGCTACCTTGCCATCACGTCCCCC
TTCAAGTACCAGTGCCTGCTGACCAAGAACAAGGCCCGGGTGGTCATTCTGATGGTGTGG
GTCGTGTCGGGCCTTATCTCCTTCTTACCCATTAAGATGCACTGGTACCAGGCCACCCAC
CGGGAAGCCTTAAACTGCTATGCAGAGGAGGCCTGCTGCGACTTCTTCACCAACCAGCCT
TACGCCATCGCCTCTTCCATCGTGTCCTTCTACCTGCCCCTGGTAGTCATGGTCTTCGTC
TACTCCAGGGTCTTTCAAGTAGCCAGAAGGCAGCTCCAGAAGATCGACAAGTCTGAGGGC
CGCTTCCACGCCCAGAACCTCAGCCAAGCGGAGCAGGATGGGCGGAGCGGGCCGGGACAT
CGGAGGTCCTCCAAGTTCTGCTTGAAGGAACACAAAGCCCTCAAGACGCTAGGGATCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23379627|gb|AAM76556.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23379627|gb|AAM76556.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               406-605, - strand, RNAz p=0.818602

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-605, - strand, RNAz p=0.818602

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               123-1080, gnl|bosTau2|chr7 (42690242-42689286)
               

               
               123-1080, gnl|Hg17|chr5 (148186439-148187421)
               

               
               123-1080, gnl|Mm7|chr18 (62569247-62568358)
               


               
               365-935, gnl|bosTau2|chr27 (21091077-21090504)
               

               
               365-935, gnl|Hg17|chr8 (37943014-37942441)
               

               
               365-935, gnl|Mm7|chr8 (25983861-25983297)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1080, gnl|bosTau2|chr7 (42690242-42689286)
               

               
               123-1080, gnl|Hg17|chr5 (148186439-148187421)
               

               
               123-1080, gnl|Mm7|chr18 (62569247-62568358)
               


               
               365-935, gnl|bosTau2|chr27 (21091077-21090504)
               

               
               365-935, gnl|Hg17|chr8 (37943014-37942441)
               

               
               365-935, gnl|Mm7|chr8 (25983861-25983297)

	123-1080, gnl\|bosTau2\|chr7 (42690242-42689286)
	123-1080, gnl\|Hg17\|chr5 (148186439-148187421)
	123-1080, gnl\|Mm7\|chr18 (62569247-62568358)

	365-935, gnl\|bosTau2\|chr27 (21091077-21090504)
	365-935, gnl\|Hg17\|chr8 (37943014-37942441)
	365-935, gnl\|Mm7\|chr8 (25983861-25983297)