Non-Coding RNA Search

Ss1.1-Spl1-SPL010039C02.5

Sequence:


               
               GATTACCCCCCGCACATGTGCTGCCAGGTGTCATTCCGCAAGCACCAACAATGTTACCTC
CTGTAATCTCTCTAGTCACCCGTGAGGACAGTAGGGTGGGAGCTATTCTTCTCTCACTTT
ATCCCAGGTGGGAAAGCTGCAGGGGTGGGGCCCCCTCACGCCAGGACACAGGGAAGGTGA
CAGAGCCGGGACAGGAAACCCAGCGTCCCCCTCCTTGGACCAGTGCGCACTGAGAGTGCG
AGGGGAGGCGGGCTCTGGAGCGTAGCTGCAATCCTGTCTCCCTCTCTGCAGTTTCGTCCC
TGCAGAATTCCCCTGACTTCTCGGCCTTCCCCAAGCTGGAGCAGCCAGAGGAAGACAAGT
ACTCCAAGCCCACCGCCCCTCCCCCTTCAGCCCCCCCCTCTCCCTCAACCCCCGAGCCCC
CCAAGGCTGACCTCTTTGAGCAGAAGGTGGTCTTCTCTGGCTTTGGGCCCATCATGCGCT
TCTCCACCACCACATCCAGCTCGGGCCGGGCCCGGGCCCCGTCCCCTGGGGACTATAAGT
CTCCCCACGTCTCGGGGTCCGGGGCCCCCACAGGCCCCCACAAACCGATGCCCACACTGA
GCGCCGCCCCCGTGCCTGCCGAGGAGACCCCCGAGACAGGCCTGAAGGAGAAGAAGCACA
AAGCCAGCAAGAGGAGCCGACACGGGCCAGGCCGTCCCAAGGGCAGCCGCAACAAGGAGG
GTGCCGGGGGCCCCGCTCTTCCCTCCCTGCCTGGTGCCCAGCTGGCTGGCTTTACCGCCA
CTGCTGCCTCACCCTTCTCCGGAGGTTCCCTGGTCAACTCTGGCCTGGGTGGTCTGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTACCCCCCGCACATGTGCTGCCAGGTGTCATTCCGCAAGCACCAACAATGTTACCTC
CTGTAATCTCTCTAGTCACCCGTGAGGACAGTAGGGTGGGAGCTATTCTTCTCTCACTTT
ATCCCAGGTGGGAAAGCTGCAGGGGTGGGGCCCCCTCACGCCAGGACACAGGGAAGGTGA
CAGAGCCGGGACAGGAAACCCAGCGTCCCCCTCCTTGGACCAGTGCGCACTGAGAGTGCG
AGGGGAGGCGGGCTCTGGAGCGTAGCTGCAATCCTGTCTCCCTCTCTGCAGTTTCGTCCC
TGCAGAATTCCCCTGACTTCTCGGCCTTCCCCAAGCTGGAGCAGCCAGAGGAAGACAAGT
ACTCCAAGCCCACCGCCCCTCCCCCTTCAGCCCCCCCCTCTCCCTCAACCCCCGAGCCCC
CCAAGGCTGACCTCTTTGAGCAGAAGGTGGTCTTCTCTGGCTTTGGGCCCATCATGCGCT
TCTCCACCACCACATCCAGCTCGGGCCGGGCCCGGGCCCCGTCCCCTGGGGACTATAAGT
CTCCCCACGTCTCGGGGTCCGGGGCCCCCACAGGCCCCCACAAACCGATGCCCACACTGA
GCGCCGCCCCCGTGCCTGCCGAGGAGACCCCCGAGACAGGCCTGAAGGAGAAGAAGCACA
AAGCCAGCAAGAGGAGCCGACACGGGCCAGGCCGTCCCAAGGGCAGCCGCAACAAGGAGG
GTGCCGGGGGCCCCGCTCTTCCCTCCCTGCCTGGTGCCCAGCTGGCTGGCTTTACCGCCA
CTGCTGCCTCACCCTTCTCCGGAGGTTCCCTGGTCAACTCTGGCCTGGGTGGTCTGGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-817, + strand, RNAz p=0.994339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-817, + strand, RNAz p=0.994339

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               592-824, - strand, RNAmicro p=0.994865
               

               
               293-358, + strand, RNAmicro p=0.993945

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               592-824, - strand, RNAmicro p=0.994865
               

               
               293-358, + strand, RNAmicro p=0.993945

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB209633, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB209633, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-838, gnl|bosTau2|chr19 (31553829-31554674)
               

               
               2-838, gnl|Hg17|chr17 (34125838-34126692)
               

               
               2-838, gnl|Mm7|chr11 (97782157-97783042)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-838, gnl|bosTau2|chr19 (31553829-31554674)
               

               
               2-838, gnl|Hg17|chr17 (34125838-34126692)
               

               
               2-838, gnl|Mm7|chr11 (97782157-97783042)

	592-824, - strand, RNAmicro p=0.994865
	293-358, + strand, RNAmicro p=0.993945

	2-838, gnl\|bosTau2\|chr19 (31553829-31554674)
	2-838, gnl\|Hg17\|chr17 (34125838-34126692)
	2-838, gnl\|Mm7\|chr11 (97782157-97783042)