Non-Coding RNA Search

Ss1.1-Spl1-SPL01A020090.5

Sequence:


               
               CACGGGACCGGGAGCCGAGGGCCATTGAGTGGCGATGGCGGCGACGGCGAGTCCCGGGGC
CGGTGGGATGGACGCGAAGCCCCGTACCTCCCCTAAGTCGGTCAAGTTCCTGTTTGGGGG
CCTGGCCGGGTAAGCTCAGGCCCCAGGGATGGGACAGGAGGAGGAAAGGACGGATGCAAG
CAACCAGGCCCGGCTCATCTTTGGATCTGTTAGAGTGAACCGAGCCGGCACGGGGTCAGC
GCGGTCCCCGTCGTAGTGCGAGATCCATGATGGGCTACCAGGATCTTTTTACCCATCGCA
GGGTCCCTTCTGGGCTGCATGCACGGCTCCTGCCGGGCCGCCTGAGTTTCCCAACCCATT
GCTTGGCTCTGAGGGGCTGTTTGGGGTTCCAGGTCATTGCATGGCTCCTGCTGGACAACG
TGGGATCCCAGGTCATAAGTGCCCACCTCTCTTCTTTGGGTCCGACTGCATGCAGTCCTG
GGATCCCTGCTTGACACCCTTGGAGCTGCATGGAGCACTTTTCTTGCATGGCCCCTACTG
GACCCCTGGATTTTTCAGACTTATTGCTCTTGGTACATGCGGAGACTCTTGTACACATGT
CCGCCAGCCTCCTAAAACTTGGTCAGTCACATGGCAGACCCTGCCCTTTGTGACCTCTTG
TTGCCAGGTTCCAGGGGGCATTGGTAGATCTGGAACACCTGGCACTTGACTCCACCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGGGACCGGGAGCCGAGGGCCATTGAGTGGCGATGGCGGCGACGGCGAGTCCCGGGGC
CGGTGGGATGGACGCGAAGCCCCGTACCTCCCCTAAGTCGGTCAAGTTCCTGTTTGGGGG
CCTGGCCGGGTAAGCTCAGGCCCCAGGGATGGGACAGGAGGAGGAAAGGACGGATGCAAG
CAACCAGGCCCGGCTCATCTTTGGATCTGTTAGAGTGAACCGAGCCGGCACGGGGTCAGC
GCGGTCCCCGTCGTAGTGCGAGATCCATGATGGGCTACCAGGATCTTTTTACCCATCGCA
GGGTCCCTTCTGGGCTGCATGCACGGCTCCTGCCGGGCCGCCTGAGTTTCCCAACCCATT
GCTTGGCTCTGAGGGGCTGTTTGGGGTTCCAGGTCATTGCATGGCTCCTGCTGGACAACG
TGGGATCCCAGGTCATAAGTGCCCACCTCTCTTCTTTGGGTCCGACTGCATGCAGTCCTG
GGATCCCTGCTTGACACCCTTGGAGCTGCATGGAGCACTTTTCTTGCATGGCCCCTACTG
GACCCCTGGATTTTTCAGACTTATTGCTCTTGGTACATGCGGAGACTCTTGTACACATGT
CCGCCAGCCTCCTAAAACTTGGTCAGTCACATGGCAGACCCTGCCCTTTGTGACCTCTTG
TTGCCAGGTTCCAGGGGGCATTGGTAGATCTGGAACACCTGGCACTTGACTCCACCCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-200, + strand, RNAz p=0.94877

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-200, + strand, RNAz p=0.94877

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               80-174, + strand, RNAmicro p=0.999769
               

               
               86-179, - strand, RNAmicro p=0.99951

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               80-174, + strand, RNAmicro p=0.999769
               

               
               86-179, - strand, RNAmicro p=0.99951

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-719, gnl|bosTau2|chr19 (14831175-14830464)
               

               
               1-719, gnl|Hg17|chr17 (4783984-4783265)
               

               
               1-719, gnl|Mm7|chr11 (70728470-70727815)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-719, gnl|bosTau2|chr19 (14831175-14830464)
               

               
               1-719, gnl|Hg17|chr17 (4783984-4783265)
               

               
               1-719, gnl|Mm7|chr11 (70728470-70727815)

	80-174, + strand, RNAmicro p=0.999769
	86-179, - strand, RNAmicro p=0.99951

	1-719, gnl\|bosTau2\|chr19 (14831175-14830464)
	1-719, gnl\|Hg17\|chr17 (4783984-4783265)
	1-719, gnl\|Mm7\|chr11 (70728470-70727815)