Non-Coding RNA Search

Ss1.1-Spl1-SPL01A060066.5

Sequence:


               
               CTGTGCCTCTGGCCCGGCGCCCCCTCCTGCCTCTGCGCCCCAGGCTTCCAGGGCCCACGC
TGTGAGGGAAGGGTCCGTCCCAGCTGCGCAGACAGCCCCTGCAGGAACAGGGCCACCTGC
CAAGACGGCCCTCAGGGTCCCCGCTGCCTCTGCCCACCCGGCTACACAGGAGGCAGCTGC
CAGACGCTGATGGACTTCTGTGCCCAGAAGCCCTGTCCACGCAATTCCCGCTGCCTCCAG
ACAGGGCCCTCCTACCAATGCCTGTGCCTCCAGGGATGGACTGGGCCTCTCTGCAACCTT
CCGCTGTCCTCCTGCCAGAAGGCGGCTCTGAGCCAAGGCGCAGAAGTCTCTTCCCTGTGC
CAGAACGGAGGCATCTGCGTTGACAACGGCCCCCCCTGGGAGAGGACAGCATCGGCCTCA
AGGCACTGAAACCAGAGGCAGAAGTTGATGAGGACGGAGTTGTGATGTGCTCGGGCCCCG
AGGAAGGAGAGGAGGTGGGCCAGGCTGAAGAAATGGCCTCACCCTCCAAGTGCCAGCTCT
GGCCTCTGAGTGCCGACTGTCAGGAGCTCCCCCAGGCAGCCATGCTGACTCCTCCCCAGG
ATTCGGAGGTGGATATCCCTGATGTGGACACCCGTGGACCTGATGGAGTGACACCCCTGA
TGTCAGCAGTCTGCTGTGGGGGAGTGGAGTCCAGGACCTATCAGGAGACATGGTTGGGAA
GCCCTGAGCCCTGGGAACCTCTGCTGGGTGGCGGGGCTTGTCCCCAGGTTCACACCGTGG
GCACTGGGGAGACCCCCCTGCACCTGGCTGCCCGATTCTCCCGGCCAACCGCTGCCCGCC
GCCTTCTTGAAGCGGGAGCCAACCCCAACCAGCCAGACCGGGCAGGGCGCACCCCCCTTC
ACACTGCTGTGGCTGCTGATGCTCGCGAGGTTTGCCAGCTCTTACTCCGAAGCAGACAGA
CTGCCGTGGATGCACGGACAGAGGATGGGACCACAGCCCTGATGTGGCCGCCAGGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGCCTCTGGCCCGGCGCCCCCTCCTGCCTCTGCGCCCCAGGCTTCCAGGGCCCACGC
TGTGAGGGAAGGGTCCGTCCCAGCTGCGCAGACAGCCCCTGCAGGAACAGGGCCACCTGC
CAAGACGGCCCTCAGGGTCCCCGCTGCCTCTGCCCACCCGGCTACACAGGAGGCAGCTGC
CAGACGCTGATGGACTTCTGTGCCCAGAAGCCCTGTCCACGCAATTCCCGCTGCCTCCAG
ACAGGGCCCTCCTACCAATGCCTGTGCCTCCAGGGATGGACTGGGCCTCTCTGCAACCTT
CCGCTGTCCTCCTGCCAGAAGGCGGCTCTGAGCCAAGGCGCAGAAGTCTCTTCCCTGTGC
CAGAACGGAGGCATCTGCGTTGACAACGGCCCCCCCTGGGAGAGGACAGCATCGGCCTCA
AGGCACTGAAACCAGAGGCAGAAGTTGATGAGGACGGAGTTGTGATGTGCTCGGGCCCCG
AGGAAGGAGAGGAGGTGGGCCAGGCTGAAGAAATGGCCTCACCCTCCAAGTGCCAGCTCT
GGCCTCTGAGTGCCGACTGTCAGGAGCTCCCCCAGGCAGCCATGCTGACTCCTCCCCAGG
ATTCGGAGGTGGATATCCCTGATGTGGACACCCGTGGACCTGATGGAGTGACACCCCTGA
TGTCAGCAGTCTGCTGTGGGGGAGTGGAGTCCAGGACCTATCAGGAGACATGGTTGGGAA
GCCCTGAGCCCTGGGAACCTCTGCTGGGTGGCGGGGCTTGTCCCCAGGTTCACACCGTGG
GCACTGGGGAGACCCCCCTGCACCTGGCTGCCCGATTCTCCCGGCCAACCGCTGCCCGCC
GCCTTCTTGAAGCGGGAGCCAACCCCAACCAGCCAGACCGGGCAGGGCGCACCCCCCTTC
ACACTGCTGTGGCTGCTGATGCTCGCGAGGTTTGCCAGCTCTTACTCCGAAGCAGACAGA
CTGCCGTGGATGCACGGACAGAGGATGGGACCACAGCCCTGATGTGGCCGCCAGGCTGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               642-760, - strand, RNAz p=0.900394
               

               
               712-871, - strand, RNAz p=0.974252

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-760, - strand, RNAz p=0.900394
               

               
               712-871, - strand, RNAz p=0.974252

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               642-941, gnl|bosTau2|chr23 (23674406-23674705)
               

               
               642-941, gnl|canFam2|chr12 (4591768-4591966)
               

               
               642-941, gnl|danRer3|chrUn (56047148-56047335)
               

               
               642-941, gnl|dasNov1|scaffold_88448 (3907-4103)
               

               
               642-941, gnl|echTel1|scaffold_302829 (3064-3254)
               

               
               642-941, gnl|fr1|chrUn (108701185-108700988)
               

               
               642-941, gnl|hg17|chr6 (32273042-32273240)
               

               
               642-941, gnl|Hg17|chr6 (32273350-32273051)
               

               
               642-941, gnl|loxAfr1|scaffold_48948 (9587-9389)
               

               
               642-941, gnl|mm7|chr17 (32667443-32667245)
               

               
               642-941, gnl|Mm7|chr17 (32667124-32667432)
               

               
               642-941, gnl|monDom2|scaffold_42 (17127678-17127483)
               

               
               642-941, gnl|oryCun1|scaffold_205324 (7244-7442)
               

               
               642-941, gnl|panTro1|chr5 (32641615-32641813)
               

               
               642-941, gnl|rheMac2|chr4 (31819114-31819312)
               

               
               642-941, gnl|rn3|chr20 (4265825-4266023)
               

               
               642-941, gnl|tetNig1|chr4 (4013757-4013558)
               

               
               642-941, gnl|xenTro1|scaffold_903 (109081-108891)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               642-941, gnl|bosTau2|chr23 (23674406-23674705)
               

               
               642-941, gnl|canFam2|chr12 (4591768-4591966)
               

               
               642-941, gnl|danRer3|chrUn (56047148-56047335)
               

               
               642-941, gnl|dasNov1|scaffold_88448 (3907-4103)
               

               
               642-941, gnl|echTel1|scaffold_302829 (3064-3254)
               

               
               642-941, gnl|fr1|chrUn (108701185-108700988)
               

               
               642-941, gnl|hg17|chr6 (32273042-32273240)
               

               
               642-941, gnl|Hg17|chr6 (32273350-32273051)
               

               
               642-941, gnl|loxAfr1|scaffold_48948 (9587-9389)
               

               
               642-941, gnl|mm7|chr17 (32667443-32667245)
               

               
               642-941, gnl|Mm7|chr17 (32667124-32667432)
               

               
               642-941, gnl|monDom2|scaffold_42 (17127678-17127483)
               

               
               642-941, gnl|oryCun1|scaffold_205324 (7244-7442)
               

               
               642-941, gnl|panTro1|chr5 (32641615-32641813)
               

               
               642-941, gnl|rheMac2|chr4 (31819114-31819312)
               

               
               642-941, gnl|rn3|chr20 (4265825-4266023)
               

               
               642-941, gnl|tetNig1|chr4 (4013757-4013558)
               

               
               642-941, gnl|xenTro1|scaffold_903 (109081-108891)

	642-760, - strand, RNAz p=0.900394
	712-871, - strand, RNAz p=0.974252

	642-941, gnl\|bosTau2\|chr23 (23674406-23674705)
	642-941, gnl\|canFam2\|chr12 (4591768-4591966)
	642-941, gnl\|danRer3\|chrUn (56047148-56047335)
	642-941, gnl\|dasNov1\|scaffold_88448 (3907-4103)
	642-941, gnl\|echTel1\|scaffold_302829 (3064-3254)
	642-941, gnl\|fr1\|chrUn (108701185-108700988)
	642-941, gnl\|hg17\|chr6 (32273042-32273240)
	642-941, gnl\|Hg17\|chr6 (32273350-32273051)
	642-941, gnl\|loxAfr1\|scaffold_48948 (9587-9389)
	642-941, gnl\|mm7\|chr17 (32667443-32667245)
	642-941, gnl\|Mm7\|chr17 (32667124-32667432)
	642-941, gnl\|monDom2\|scaffold_42 (17127678-17127483)
	642-941, gnl\|oryCun1\|scaffold_205324 (7244-7442)
	642-941, gnl\|panTro1\|chr5 (32641615-32641813)
	642-941, gnl\|rheMac2\|chr4 (31819114-31819312)
	642-941, gnl\|rn3\|chr20 (4265825-4266023)
	642-941, gnl\|tetNig1\|chr4 (4013757-4013558)
	642-941, gnl\|xenTro1\|scaffold_903 (109081-108891)