Non-Coding RNA Search

Ss1.1-Spl1-SPL01A060102.5

Sequence:


               
               AGATGCAGCAGGCAGCTGCCAGCAGGAGGGATCGGCGGACGCAGCCAGCAGGCGGCATTC
CGGGCAGTGCGGGGCATCGGGCCTCACCCGCCTGGAGGATGCGGGCTGAAGCCCCGCCCC
ATGGCCCCTGAGCCACATGGCCTTCCCGGGCCCCAGGACACCTGCCTCCAATCCAGTGCC
AGGCAGGAAGAGAGCCATGTGCTGGGTCAGTGCCACCAGCTTCATGGCGGCCGAGGAGAT
GCACTGGCCTGTCCCCATGAAGGCCATTGGTGCCCAGAACTTGCTAACCATGCCTGGGGG
TGTGGCCAAGGCTGGCTACCTGCACAAGAAAGGTGGTACCCAACTGCAGCTGCTCAGATG
GCCCCTGCGCTTTGTCATCATCCACAAGCGATGCATCTACTACTTCAAGAGCAGCACGTC
TGCCTCCCCGCAGGGCGCCTTCTCCCTGAGTGGCTACAACCGGGTGATGCGGGCGGCGGA
GGAGACGACGTCCAGCAACGTCTTTCCCTTCAAGATCGTCCACATCAGCAAGAAGCACCG
CACGTGGTTCTTCTCGGCCTCCTCCGAGGAGGAGCGCAAGAGCTGGATGGCCATGCTGCG
CAGGGAGATCGGCCACTTCCACGAGAAGAAGGAGCTGCCACTGGATGCCAGCGACTCCAG
CTCCGACACAGACAGCTTCTACGGTGCGATCGAGCGGCCCGTGGACATCAGCCTCTCTCC
ACACCCCACGGACACGGAAGACTACGAGCACGACGACGAGGACGACTCGTACCTGGAGCC
CGACTCCCCCGAGCCCGTGCAGCCTGAGGATGCCCTGATCCACCCGCCGGCCTACCCCCC
GCCTCCTGTGCCCACACCCAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGCAGCAGGCAGCTGCCAGCAGGAGGGATCGGCGGACGCAGCCAGCAGGCGGCATTC
CGGGCAGTGCGGGGCATCGGGCCTCACCCGCCTGGAGGATGCGGGCTGAAGCCCCGCCCC
ATGGCCCCTGAGCCACATGGCCTTCCCGGGCCCCAGGACACCTGCCTCCAATCCAGTGCC
AGGCAGGAAGAGAGCCATGTGCTGGGTCAGTGCCACCAGCTTCATGGCGGCCGAGGAGAT
GCACTGGCCTGTCCCCATGAAGGCCATTGGTGCCCAGAACTTGCTAACCATGCCTGGGGG
TGTGGCCAAGGCTGGCTACCTGCACAAGAAAGGTGGTACCCAACTGCAGCTGCTCAGATG
GCCCCTGCGCTTTGTCATCATCCACAAGCGATGCATCTACTACTTCAAGAGCAGCACGTC
TGCCTCCCCGCAGGGCGCCTTCTCCCTGAGTGGCTACAACCGGGTGATGCGGGCGGCGGA
GGAGACGACGTCCAGCAACGTCTTTCCCTTCAAGATCGTCCACATCAGCAAGAAGCACCG
CACGTGGTTCTTCTCGGCCTCCTCCGAGGAGGAGCGCAAGAGCTGGATGGCCATGCTGCG
CAGGGAGATCGGCCACTTCCACGAGAAGAAGGAGCTGCCACTGGATGCCAGCGACTCCAG
CTCCGACACAGACAGCTTCTACGGTGCGATCGAGCGGCCCGTGGACATCAGCCTCTCTCC
ACACCCCACGGACACGGAAGACTACGAGCACGACGACGAGGACGACTCGTACCTGGAGCC
CGACTCCCCCGAGCCCGTGCAGCCTGAGGATGCCCTGATCCACCCGCCGGCCTACCCCCC
GCCTCCTGTGCCCACACCCAGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55622134|ref|XP_517076.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55622134|ref|XP_517076.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               218-360, gnl|bosTau2|chr6 (65238762-65238904)
               

               
               218-360, gnl|Hg17|chr4 (2859344-2859486)
               

               
               218-360, gnl|Mm7|chr5 (33614115-33614257)
               


               
               462-586, gnl|bosTau2|chr6 (65241743-65241868)
               

               
               462-586, gnl|Hg17|chr4 (2863344-2863470)
               

               
               462-586, gnl|Mm7|chr5 (33618012-33618137)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-360, gnl|bosTau2|chr6 (65238762-65238904)
               

               
               218-360, gnl|Hg17|chr4 (2859344-2859486)
               

               
               218-360, gnl|Mm7|chr5 (33614115-33614257)
               


               
               462-586, gnl|bosTau2|chr6 (65241743-65241868)
               

               
               462-586, gnl|Hg17|chr4 (2863344-2863470)
               

               
               462-586, gnl|Mm7|chr5 (33618012-33618137)

	218-360, gnl\|bosTau2\|chr6 (65238762-65238904)
	218-360, gnl\|Hg17\|chr4 (2859344-2859486)
	218-360, gnl\|Mm7\|chr5 (33614115-33614257)

	462-586, gnl\|bosTau2\|chr6 (65241743-65241868)
	462-586, gnl\|Hg17\|chr4 (2863344-2863470)
	462-586, gnl\|Mm7\|chr5 (33618012-33618137)