Non-Coding RNA Search

Ss1.1-Spl1-SPL01A080097.5

Sequence:


               
               CACCAGTCTCCTCAGGCCCTCAGAGTGGCGGCCCTGAGTCCCGGCCACGGCCATGGAGCC
TCTAGAGACCCCCATCAAGGATGGCATCCTCTACCAGCAGCAAGTCAAATTTGGCAAGAA
GTCTTGGCGGAAGATGTGGGGTCTGCTGTATGCGGGAGGCCCATCAGGCGTGGCACGGCT
GGAGAGCTGGGAGTTTCGGGATGGTGGCCTGGGGCCAACAGGTGACAGGTCTGGGGGGCC
CAGCCGGCGGGGGGAGAGGCGGGTCATCCGCCTGGCCGACTGTGTGTCCGTGCTGCCGGC
TGATGGTGAGAGCTGTCCCCGGGACACCAGCGCCTTCCTGCTCACCACCACGGAGCGAAG
CCACCTGCTGGCTGCACAGCACCGCCAGGAGTGGATGGACCCCATCTGCCAGCTGGCCTT
CCCGGTGAGCACAAGGCAGGCGGGCAGGGACTCTGGGGGCTGGCCAGGGAGACCACCTCA
CCCGACCTGGTTCATCTCCGTGCTCACTCATATCCTGTCACTCAGCAAGCACCTGCCAAG
CCCCTACAAGCCTGGGAAACAGCGCAAGCCCACATTACAAGTCTTAGATGACCACACGTG
CTTTGGAGAAAATGAGAGGCTGGATGGAACCAGAAGTGACGGGGGACGTTAGACAGGATG
GTCCAGGAAGGCTTCTCAAGGGAGGAGAGGGCACCTCAAGGACAAATAACCCCCCAGGCA
AAGATCTGAAGACAGAGTGTCCTAGACCCAGGTCTGAGGGGTCTCCTAAACAGACGGAGC
GGCATGGGCAAGGGCTCTTTGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGTCTCCTCAGGCCCTCAGAGTGGCGGCCCTGAGTCCCGGCCACGGCCATGGAGCC
TCTAGAGACCCCCATCAAGGATGGCATCCTCTACCAGCAGCAAGTCAAATTTGGCAAGAA
GTCTTGGCGGAAGATGTGGGGTCTGCTGTATGCGGGAGGCCCATCAGGCGTGGCACGGCT
GGAGAGCTGGGAGTTTCGGGATGGTGGCCTGGGGCCAACAGGTGACAGGTCTGGGGGGCC
CAGCCGGCGGGGGGAGAGGCGGGTCATCCGCCTGGCCGACTGTGTGTCCGTGCTGCCGGC
TGATGGTGAGAGCTGTCCCCGGGACACCAGCGCCTTCCTGCTCACCACCACGGAGCGAAG
CCACCTGCTGGCTGCACAGCACCGCCAGGAGTGGATGGACCCCATCTGCCAGCTGGCCTT
CCCGGTGAGCACAAGGCAGGCGGGCAGGGACTCTGGGGGCTGGCCAGGGAGACCACCTCA
CCCGACCTGGTTCATCTCCGTGCTCACTCATATCCTGTCACTCAGCAAGCACCTGCCAAG
CCCCTACAAGCCTGGGAAACAGCGCAAGCCCACATTACAAGTCTTAGATGACCACACGTG
CTTTGGAGAAAATGAGAGGCTGGATGGAACCAGAAGTGACGGGGGACGTTAGACAGGATG
GTCCAGGAAGGCTTCTCAAGGGAGGAGAGGGCACCTCAAGGACAAATAACCCCCCAGGCA
AAGATCTGAAGACAGAGTGTCCTAGACCCAGGTCTGAGGGGTCTCCTAAACAGACGGAGC
GGCATGGGCAAGGGCTCTTTGACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869536|ref|XP_592810.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869536|ref|XP_592810.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-236, + strand, RNAz p=0.872463

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-236, + strand, RNAz p=0.872463

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK097259, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK097259, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-798, gnl|bosTau2|chr7 (21783144-21782485)
               

               
               117-798, gnl|Hg17|chr5 (176868151-176867513)
               

               
               117-798, gnl|Mm7|chr13 (54615550-54614939)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-798, gnl|bosTau2|chr7 (21783144-21782485)
               

               
               117-798, gnl|Hg17|chr5 (176868151-176867513)
               

               
               117-798, gnl|Mm7|chr13 (54615550-54614939)

	117-798, gnl\|bosTau2\|chr7 (21783144-21782485)
	117-798, gnl\|Hg17\|chr5 (176868151-176867513)
	117-798, gnl\|Mm7\|chr13 (54615550-54614939)