Non-Coding RNA Search

Ss1.1-Spl1-SPL01A100061.5

Sequence:


               
               ATAATGTATACAGATCACAGAAACGCTTCTTAAAACCCCATTTTCTTTCTCATCTTCCCG
TCGCTCTCTGCAGCTCTTCTCACCCCCAGCCTGAGTGCTTCTCACTTCTCTCCTCTCTGA
CTCTTTGTGATCTGTGGGAAAACAGGGGAAGAAAGGGTGCTATGGCAGTACACGGCTGGA
GTCGTCAGCCTGGTTCAGGAGAAATCCATGAAAGCTTCCCAGAGGAAGCCGTCTCGAGGC
TGAGCCCTAAAGGATGAGTACAAGTTAGGCAGCTGAAAAGGAGAGGGAAGAGTAGTCTGG
GCAGAAGAAACAGCCTGTATCAAAGCCCAAAGGGCAAACTAAGAACTCGGCCTGGTCAGT
TGGGGCCTGGACTTGGCAAAAATGAAGAGGGCATGTCTTGCAGCCTGGAAGATGCTAAGG
GGGATGGGCGCCTGGGCCTAGGGTTGGGCAGTCTGGAGATGACTAAGGCAGAGCTCATTT
GGGTATGCAAATCCTGGGGAGGGACGGGGCAGGGGTATAATAAAAAGGCTTTACCTTCAA
GCCTAGAATGCCAGGGGCATATGGAAATCAAGGCCTGGCATCTTCCTGTCACTGGGCCCT
CTGGGGGAACAATAGTCTGGCCTGTTGCTAAACTATGATTGTCTAACTGGCAGAAACCTT
GCTGGGTGTAAGGTCACTGGCTGGGGCAAGGGCCACTCTCCACATTACATAGACAGGAAA
AGAGAAACCACAGGAGGGCAAGAGGTTCCAGGCCCTTGTGCATCCAGGAGCAAAGGTAGA
CTCAGAGCCCGGGGGCAGGAAGGAAGACCTGGGGGCCTGGTCTTCACCTCCAGTCCCAGA
GAGGCTGTACAGCCTCAGATCCACAACGGGTCTCAGCCCCTTTATTTGTCAAATCAGGGA
ACTGGACATCTCCATGGGTCTCTAGTTTGCAAGCTTTTTTTTCCTTTTTTTTTTTTTTAA
ACCATAACTTTATTGGTCAAATGAGTCATATAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAATGTATACAGATCACAGAAACGCTTCTTAAAACCCCATTTTCTTTCTCATCTTCCCG
TCGCTCTCTGCAGCTCTTCTCACCCCCAGCCTGAGTGCTTCTCACTTCTCTCCTCTCTGA
CTCTTTGTGATCTGTGGGAAAACAGGGGAAGAAAGGGTGCTATGGCAGTACACGGCTGGA
GTCGTCAGCCTGGTTCAGGAGAAATCCATGAAAGCTTCCCAGAGGAAGCCGTCTCGAGGC
TGAGCCCTAAAGGATGAGTACAAGTTAGGCAGCTGAAAAGGAGAGGGAAGAGTAGTCTGG
GCAGAAGAAACAGCCTGTATCAAAGCCCAAAGGGCAAACTAAGAACTCGGCCTGGTCAGT
TGGGGCCTGGACTTGGCAAAAATGAAGAGGGCATGTCTTGCAGCCTGGAAGATGCTAAGG
GGGATGGGCGCCTGGGCCTAGGGTTGGGCAGTCTGGAGATGACTAAGGCAGAGCTCATTT
GGGTATGCAAATCCTGGGGAGGGACGGGGCAGGGGTATAATAAAAAGGCTTTACCTTCAA
GCCTAGAATGCCAGGGGCATATGGAAATCAAGGCCTGGCATCTTCCTGTCACTGGGCCCT
CTGGGGGAACAATAGTCTGGCCTGTTGCTAAACTATGATTGTCTAACTGGCAGAAACCTT
GCTGGGTGTAAGGTCACTGGCTGGGGCAAGGGCCACTCTCCACATTACATAGACAGGAAA
AGAGAAACCACAGGAGGGCAAGAGGTTCCAGGCCCTTGTGCATCCAGGAGCAAAGGTAGA
CTCAGAGCCCGGGGGCAGGAAGGAAGACCTGGGGGCCTGGTCTTCACCTCCAGTCCCAGA
GAGGCTGTACAGCCTCAGATCCACAACGGGTCTCAGCCCCTTTATTTGTCAAATCAGGGA
ACTGGACATCTCCATGGGTCTCTAGTTTGCAAGCTTTTTTTTCCTTTTTTTTTTTTTTAA
ACCATAACTTTATTGGTCAAATGAGTCATATAGAGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               154-311, - strand, RNAz p=0.999805
               

               
               392-522, - strand, RNAz p=0.999561
               

               
               715-844, - strand, RNAz p=0.991174

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               154-311, - strand, RNAz p=0.999805
               

               
               392-522, - strand, RNAz p=0.999561
               

               
               715-844, - strand, RNAz p=0.991174

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-844, gnl|bosTau2|chr4 (44034936-44035816)
               

               
               1-844, gnl|Hg17|chr20 (30141043-30141847)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-844, gnl|bosTau2|chr4 (44034936-44035816)
               

               
               1-844, gnl|Hg17|chr20 (30141043-30141847)

	154-311, - strand, RNAz p=0.999805
	392-522, - strand, RNAz p=0.999561
	715-844, - strand, RNAz p=0.991174

	1-844, gnl\|bosTau2\|chr4 (44034936-44035816)
	1-844, gnl\|Hg17\|chr20 (30141043-30141847)