Non-Coding RNA Search

Ss1.1-Spl1-SPL01A110064.5

Sequence:


               
               ATTTAGATTCTGCCAGAGGTGTCTTGGCTCTGACCTTATCTCCTGCTCTCAGCCCAGCCC
TCCCCCTTCTTGGTCCCCATGTCCTCAGCAGGCAGAGGCAGGATCCCGAGATCCCCTAAG
GGCCTTGCCGGTGGGAACTGACTCTGGGATTGGGTGGGGGTGCAGTGGGGTGGGGGAGCA
TTGCCTGCAGGGATTTGGAAGCTCTGGGTCCTTCCAGCTTCATCTTGTTCTCTCACCCTT
GTTGGGTAGGCTTAGTGCCCCCTCCCAGGAATAGCCCCAGCCCTGCCCCTGCAGATCCCC
CAGCCCTTGTGCCCCAGGTGGTCCAACGTGGTGGGCACACAGATGCCCAGCCAATGTGGT
GGGTACACAGATGCCCAGCAACTCCTTTGCCTCTGGAGCCTGGTCAGCCAGGTAGGCTGC
AGGCCCAGGTTGTCCACTCCAGGTGGGGCCTGGAGACCCGGGCAGGCCAGGTGGGTAGGG
CGGGGTCTGCCCAGCCAGAGCCTCGCCCTGGCTTTGCAAGTGACAATGTAATTGCTCTGT
AAATTTACCTTTGAGGAAGACCTCAGTGAGCACTTGCCCCTCCCAGCTGGAACCAACATC
TAGAAGCTGAAATACCAGTTTCCAATGTTGTGAGAAGGAAGGACTTGAGGGGGGCTAGGG
GAGCAGGTGGTGCGGGGAGCCTGGGGACAGCACTGGCCCTGTGCCTGCCCCATTCTCCTG
GGGCAACTGAATCAACCCTTCTGTGAGGCGCTGTGGGGCCCCAGGAATGACTCGGCCCCT
GCCCGCCCTGGGGCCGCTCTGGTACAGGGCTGGCAGCAGCGCTGATGGCGAAAGTTCAGA
TGAGGAGATGGCGAGGTTCCCTACATGGAAGGAATGGCAAAGGCAACATCTTGGACAGAG
AAAAGCTTTAGCAAACCAGGGGAGAGGGTGGCCGTCCCGTGGCGTGGCAGTCCTGGCTGG
CAGAGGGAAGGATGGACGTCTAGGGAAGAGGCGTGATTCGGGAAGGGCGGGTGGAGCAGC
TCCAGGAAGGCCTTGAAGGTTGGTCTTTATTCTGCAGGCCCAGCAGAGCCGCTGAAGGTC
TGTGAGCAGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAGATTCTGCCAGAGGTGTCTTGGCTCTGACCTTATCTCCTGCTCTCAGCCCAGCCC
TCCCCCTTCTTGGTCCCCATGTCCTCAGCAGGCAGAGGCAGGATCCCGAGATCCCCTAAG
GGCCTTGCCGGTGGGAACTGACTCTGGGATTGGGTGGGGGTGCAGTGGGGTGGGGGAGCA
TTGCCTGCAGGGATTTGGAAGCTCTGGGTCCTTCCAGCTTCATCTTGTTCTCTCACCCTT
GTTGGGTAGGCTTAGTGCCCCCTCCCAGGAATAGCCCCAGCCCTGCCCCTGCAGATCCCC
CAGCCCTTGTGCCCCAGGTGGTCCAACGTGGTGGGCACACAGATGCCCAGCCAATGTGGT
GGGTACACAGATGCCCAGCAACTCCTTTGCCTCTGGAGCCTGGTCAGCCAGGTAGGCTGC
AGGCCCAGGTTGTCCACTCCAGGTGGGGCCTGGAGACCCGGGCAGGCCAGGTGGGTAGGG
CGGGGTCTGCCCAGCCAGAGCCTCGCCCTGGCTTTGCAAGTGACAATGTAATTGCTCTGT
AAATTTACCTTTGAGGAAGACCTCAGTGAGCACTTGCCCCTCCCAGCTGGAACCAACATC
TAGAAGCTGAAATACCAGTTTCCAATGTTGTGAGAAGGAAGGACTTGAGGGGGGCTAGGG
GAGCAGGTGGTGCGGGGAGCCTGGGGACAGCACTGGCCCTGTGCCTGCCCCATTCTCCTG
GGGCAACTGAATCAACCCTTCTGTGAGGCGCTGTGGGGCCCCAGGAATGACTCGGCCCCT
GCCCGCCCTGGGGCCGCTCTGGTACAGGGCTGGCAGCAGCGCTGATGGCGAAAGTTCAGA
TGAGGAGATGGCGAGGTTCCCTACATGGAAGGAATGGCAAAGGCAACATCTTGGACAGAG
AAAAGCTTTAGCAAACCAGGGGAGAGGGTGGCCGTCCCGTGGCGTGGCAGTCCTGGCTGG
CAGAGGGAAGGATGGACGTCTAGGGAAGAGGCGTGATTCGGGAAGGGCGGGTGGAGCAGC
TCCAGGAAGGCCTTGAAGGTTGGTCTTTATTCTGCAGGCCCAGCAGAGCCGCTGAAGGTC
TGTGAGCAGGGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               372-594, - strand, RNAz p=0.998805
               

               
               625-722, - strand, RNAz p=0.767054

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-594, - strand, RNAz p=0.998805
               

               
               625-722, - strand, RNAz p=0.767054

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               574-697, + strand, RNAmicro p=0.997898

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               574-697, + strand, RNAmicro p=0.997898

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               184-722, gnl|bosTau2|chr19 (19150621-19150091)
               

               
               184-722, gnl|Hg17|chr17 (3810148-3809528)
               

               
               184-722, gnl|Mm7|chr11 (73046776-73047420)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-722, gnl|bosTau2|chr19 (19150621-19150091)
               

               
               184-722, gnl|Hg17|chr17 (3810148-3809528)
               

               
               184-722, gnl|Mm7|chr11 (73046776-73047420)

	372-594, - strand, RNAz p=0.998805
	625-722, - strand, RNAz p=0.767054

	184-722, gnl\|bosTau2\|chr19 (19150621-19150091)
	184-722, gnl\|Hg17\|chr17 (3810148-3809528)
	184-722, gnl\|Mm7\|chr11 (73046776-73047420)