Non-Coding RNA Search

Ss1.1-Spl1-SPL01B030102.5

Sequence:


               
               TACATGATTTCACAAGGAAAACCGCTATTTGAATAAACCGCACAAATAAAGTTCAGTCTG
AGAAACTGAGGTGGTGAAATGAATTACAAAAATGCATATTTGTACTACAAAAAAAATCAC
TGATGTCATCCCCATAATTACTGAATCGACAAGGAAAATATCGTCATTGGAATGTTAAAT
ATACCCCACAATAAGCCATGATTTGAATTAAATACCAGTAATTAGGCAATCATTTTAAAA
GATGCTTCTCTACTGTTTTCTTTCCCCCAAGAAGTTTCAAGTCAACAAATGAAATTAAAA
AGCAAATGTAAATGTGTTCTGCACATAAGCAAATGCAAGATGCAATCCGTTATACCTGAA
ACCTTACTACAAGGGACCTTCAGATTTCCTCTTTAAAAAAAAAAAAAAATCCAGATTCCA
CAACAACACTATCACTATCACAGCCCTTGAAAAACTAAATGTGCTTGAAAACTATAAAGG
ATGCACTCTTTTAACTAAGGGAATTGCAGACAATCAATAAAAAGGAGGGACAGGAAGTAA
CCAAACCTTGGAGAAATACCTGCAAGATTCAGCCTTGTGCCAGGGGTTGCCAGAAGACAG
ACAGTATCAGATACCCGAGGAGCCCCACATAAAGAAGTGTAGAGCTGAACCAACCAGTAG
GATGCACATTCCAAATTGCCTACATCAAGAATACAGTGTTGGTTGTATCATGGATGGGCG
ATGATCTGTCGGCCAGCACATATTTTTGTTCCAGTTGACATTAAATAACATCTCTCGCTA
ACGAATGCTTCATGTAAAGGAAACAGCTCTGAGGCCAGAGGATTTTCTTCAGATTGTGTG
CAATATAAAAGGTTGACCAAGAGATAAAGAAGAACATTAAAAATTACTAAGGTATCATTT
CAGTCTTTGACATTTTGATGACGTTTAATCATTCAAAAACTAATCAGTACTGCTGATAAA
GAAAGACTAAATGTTTGTTTCCAACAAGCCAACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATGATTTCACAAGGAAAACCGCTATTTGAATAAACCGCACAAATAAAGTTCAGTCTG
AGAAACTGAGGTGGTGAAATGAATTACAAAAATGCATATTTGTACTACAAAAAAAATCAC
TGATGTCATCCCCATAATTACTGAATCGACAAGGAAAATATCGTCATTGGAATGTTAAAT
ATACCCCACAATAAGCCATGATTTGAATTAAATACCAGTAATTAGGCAATCATTTTAAAA
GATGCTTCTCTACTGTTTTCTTTCCCCCAAGAAGTTTCAAGTCAACAAATGAAATTAAAA
AGCAAATGTAAATGTGTTCTGCACATAAGCAAATGCAAGATGCAATCCGTTATACCTGAA
ACCTTACTACAAGGGACCTTCAGATTTCCTCTTTAAAAAAAAAAAAAAATCCAGATTCCA
CAACAACACTATCACTATCACAGCCCTTGAAAAACTAAATGTGCTTGAAAACTATAAAGG
ATGCACTCTTTTAACTAAGGGAATTGCAGACAATCAATAAAAAGGAGGGACAGGAAGTAA
CCAAACCTTGGAGAAATACCTGCAAGATTCAGCCTTGTGCCAGGGGTTGCCAGAAGACAG
ACAGTATCAGATACCCGAGGAGCCCCACATAAAGAAGTGTAGAGCTGAACCAACCAGTAG
GATGCACATTCCAAATTGCCTACATCAAGAATACAGTGTTGGTTGTATCATGGATGGGCG
ATGATCTGTCGGCCAGCACATATTTTTGTTCCAGTTGACATTAAATAACATCTCTCGCTA
ACGAATGCTTCATGTAAAGGAAACAGCTCTGAGGCCAGAGGATTTTCTTCAGATTGTGTG
CAATATAAAAGGTTGACCAAGAGATAAAGAAGAACATTAAAAATTACTAAGGTATCATTT
CAGTCTTTGACATTTTGATGACGTTTAATCATTCAAAAACTAATCAGTACTGCTGATAAA
GAAAGACTAAATGTTTGTTTCCAACAAGCCAACTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               264-394, - strand, RNAz p=0.875275

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-394, - strand, RNAz p=0.875275

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-610, gnl|bosTau2|chr3 (30059714-30059113)
               

               
               1-610, gnl|canFam2|chr6 (44406931-44406269)
               

               
               1-610, gnl|dasNov1|scaffold_52129 (8042-7364)
               

               
               1-610, gnl|hg17|chr1 (110926011-110926687)
               

               
               1-610, gnl|Hg17|chr1 (110926739-110926140)
               

               
               1-610, gnl|mm7|chr3 (106857984-106857327)
               

               
               1-610, gnl|Mm7|chr3 (106857278-106857858)
               

               
               1-610, gnl|monDom2|scaffold_0 (5245293-5244625)
               

               
               1-610, gnl|oryCun1|scaffold_61364 (1770-1101)
               

               
               1-610, gnl|panTro1|chr1 (111355889-111355208)
               

               
               1-610, gnl|rheMac2|chr1 (113731025-113731706)
               

               
               1-610, gnl|rn3|chr2 (202438652-202438007)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-610, gnl|bosTau2|chr3 (30059714-30059113)
               

               
               1-610, gnl|canFam2|chr6 (44406931-44406269)
               

               
               1-610, gnl|dasNov1|scaffold_52129 (8042-7364)
               

               
               1-610, gnl|hg17|chr1 (110926011-110926687)
               

               
               1-610, gnl|Hg17|chr1 (110926739-110926140)
               

               
               1-610, gnl|mm7|chr3 (106857984-106857327)
               

               
               1-610, gnl|Mm7|chr3 (106857278-106857858)
               

               
               1-610, gnl|monDom2|scaffold_0 (5245293-5244625)
               

               
               1-610, gnl|oryCun1|scaffold_61364 (1770-1101)
               

               
               1-610, gnl|panTro1|chr1 (111355889-111355208)
               

               
               1-610, gnl|rheMac2|chr1 (113731025-113731706)
               

               
               1-610, gnl|rn3|chr2 (202438652-202438007)

	1-610, gnl\|bosTau2\|chr3 (30059714-30059113)
	1-610, gnl\|canFam2\|chr6 (44406931-44406269)
	1-610, gnl\|dasNov1\|scaffold_52129 (8042-7364)
	1-610, gnl\|hg17\|chr1 (110926011-110926687)
	1-610, gnl\|Hg17\|chr1 (110926739-110926140)
	1-610, gnl\|mm7\|chr3 (106857984-106857327)
	1-610, gnl\|Mm7\|chr3 (106857278-106857858)
	1-610, gnl\|monDom2\|scaffold_0 (5245293-5244625)
	1-610, gnl\|oryCun1\|scaffold_61364 (1770-1101)
	1-610, gnl\|panTro1\|chr1 (111355889-111355208)
	1-610, gnl\|rheMac2\|chr1 (113731025-113731706)
	1-610, gnl\|rn3\|chr2 (202438652-202438007)