Non-Coding RNA Search

Ss1.1-Spl1-SPL01B060062.5

Sequence:


               
               AGGCTCTGGCTGGATGAACATGGCTGGTGATTCAGATCGCATCATGACTGCTGTCTTTGA
TGACAAGGATTTGTTGGAATTGTTCGGGGATGACTTTGAAAATTTCACTGGCACGCCACC
CACAGACGAACATTACTATAGTCCCTGTAGGATAGACACTGAGTCACTCAACAAGTATGC
CGTAGTTGTCATCTATGCCCTGGTCTTCCTGCTAAGCCTACTGGGAAACTCCCTGGTGAT
GCTGGTCATCTTATACAGCCGGGTTGGCCGCTCTGTCACTGATGTCTACCTGCTGAACCT
GGCCATGGCTGACCTGCTCTTTGCCCTGACCTTGCCTATCTGGGCCACCTCCAAGGCAAA
GGGCTGGATCTTTGGCACCCCTCTGTGCAAGGTGGTCTCGCTCCTGAAGGAAGTCAACTT
CTACAGTGGTATTCTACTGCTGGCTTGCATCAGCGTGGACCGCTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTCTGGCTGGATGAACATGGCTGGTGATTCAGATCGCATCATGACTGCTGTCTTTGA
TGACAAGGATTTGTTGGAATTGTTCGGGGATGACTTTGAAAATTTCACTGGCACGCCACC
CACAGACGAACATTACTATAGTCCCTGTAGGATAGACACTGAGTCACTCAACAAGTATGC
CGTAGTTGTCATCTATGCCCTGGTCTTCCTGCTAAGCCTACTGGGAAACTCCCTGGTGAT
GCTGGTCATCTTATACAGCCGGGTTGGCCGCTCTGTCACTGATGTCTACCTGCTGAACCT
GGCCATGGCTGACCTGCTCTTTGCCCTGACCTTGCCTATCTGGGCCACCTCCAAGGCAAA
GGGCTGGATCTTTGGCACCCCTCTGTGCAAGGTGGTCTCGCTCCTGAAGGAAGTCAACTT
CTACAGTGGTATTCTACTGCTGGCTTGCATCAGCGTGGACCGCTACCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|7209689|dbj|BAA92295.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|7209689|dbj|BAA92295.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               280-399, + strand, RNAz p=0.525656

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, + strand, RNAz p=0.525656

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               40-468, gnl|bosTau2|chr2 (64548080-64547652)
               

               
               40-468, gnl|Hg17|chr2 (218855453-218855031)
               

               
               40-468, gnl|Mm7|chr1 (74433041-74432624)
               


               
               189-466, gnl|bosTau2|chr19 (34059291-34059568)
               

               
               189-466, gnl|Hg17|chr17 (35965469-35965192)
               

               
               189-466, gnl|Mm7|chr11 (99254946-99254669)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-468, gnl|bosTau2|chr2 (64548080-64547652)
               

               
               40-468, gnl|Hg17|chr2 (218855453-218855031)
               

               
               40-468, gnl|Mm7|chr1 (74433041-74432624)
               


               
               189-466, gnl|bosTau2|chr19 (34059291-34059568)
               

               
               189-466, gnl|Hg17|chr17 (35965469-35965192)
               

               
               189-466, gnl|Mm7|chr11 (99254946-99254669)

	40-468, gnl\|bosTau2\|chr2 (64548080-64547652)
	40-468, gnl\|Hg17\|chr2 (218855453-218855031)
	40-468, gnl\|Mm7\|chr1 (74433041-74432624)

	189-466, gnl\|bosTau2\|chr19 (34059291-34059568)
	189-466, gnl\|Hg17\|chr17 (35965469-35965192)
	189-466, gnl\|Mm7\|chr11 (99254946-99254669)