Ss1.1-Spl1-SPL01B060104.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAATGCCCCGGGCATGTGTGAGGACAGCCAAGTTGAGCTGAAGATGCGTAAAAGGCTAT AGACCCACACACTCACCGGTTCCCAGAGAGGACGGGTGGACCAGAGAGCCACCCAGCACA CCACTCACACAGAGAGCATCTGAGTCTGTGGTCCTCATGACAGGTGACACAGGCCCCCCA AAGCAGAGCAGAACCCAATATGGCTCCATCTCCAGCTCACCGAGTCCAGGGCCACCACAA GTACCTCCCGGAGGGACCTACCTGAGTGAGAAGATCCCCATCCCGAATGCAGAACCGGGC ACATTCAGCCTCCGCAAGCTGTGGGCCTTCACCGGGCCCGGCTTCCTCATGAGCATTGCT TACCTGGACCCGGGAAACATCCAGTCGGATCTTCAGGCTGGCGCTGTGGCTGGATTCAAA CTGCTCTGGGTGCTGCTGTGGGCCACGGTGTTGGGTTTGCTCTGCCAGCGACTTGCTGCC CGGCTGGGCGTGGTGACAGGCAAGGACTTGGGTGAGATCTGCCATCTCTACTACCCTAAG GTTCCCCGCACCCTCCTCTGGCTGACCATGGAGCTAGCCATCGTGGGCTCGGACATGCAG GAAGTCATCGGCACGGCTATTGCCTTCAATCTGCTCTCAGCTGGAGGAATCCCACTCTGG GGTGGTGTCCTCATCACCGTCGTGGACACTTTCTTCTTCCTCTACCTAGATAACTACGGG CTGCGGAAGCTGGAAGCCTTTTTTGCATTCCTTATTGCCATTATGGCCTTCACCTTCGGA TATGAGTACGTGGTGGCGAGGCCTGCTCANGGAGCACTTCTTAGGGGCCTGTTCCTGCCC TCCTGTTCTGGCTGCGGCCAGCCCGAGCTGCTCCAGGCCGTGGGCATCGTTGGCGCCATC ATCATGCCCCACAACATCTACCTGCACTCGGCCCTGGTCAAGTCTCGAGAGGTAGACCGG ACCCGCCGGGAGGACATCCGAGAAGCCAACATGTACTTCCTGATTGAATCCACCATCGCC CTGTTTGTCTCCTTCTTCATCAACCTCTTTGTCATGGCTGTCTTTGGGCAAGCCTTCTAC CAGCAAACCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAATGCCCCGGGCATGTGTGAGGACAGCCAAGTTGAGCTGAAGATGCGTAAAAGGCTAT AGACCCACACACTCACCGGTTCCCAGAGAGGACGGGTGGACCAGAGAGCCACCCAGCACA CCACTCACACAGAGAGCATCTGAGTCTGTGGTCCTCATGACAGGTGACACAGGCCCCCCA AAGCAGAGCAGAACCCAATATGGCTCCATCTCCAGCTCACCGAGTCCAGGGCCACCACAA GTACCTCCCGGAGGGACCTACCTGAGTGAGAAGATCCCCATCCCGAATGCAGAACCGGGC ACATTCAGCCTCCGCAAGCTGTGGGCCTTCACCGGGCCCGGCTTCCTCATGAGCATTGCT TACCTGGACCCGGGAAACATCCAGTCGGATCTTCAGGCTGGCGCTGTGGCTGGATTCAAA CTGCTCTGGGTGCTGCTGTGGGCCACGGTGTTGGGTTTGCTCTGCCAGCGACTTGCTGCC CGGCTGGGCGTGGTGACAGGCAAGGACTTGGGTGAGATCTGCCATCTCTACTACCCTAAG GTTCCCCGCACCCTCCTCTGGCTGACCATGGAGCTAGCCATCGTGGGCTCGGACATGCAG GAAGTCATCGGCACGGCTATTGCCTTCAATCTGCTCTCAGCTGGAGGAATCCCACTCTGG GGTGGTGTCCTCATCACCGTCGTGGACACTTTCTTCTTCCTCTACCTAGATAACTACGGG CTGCGGAAGCTGGAAGCCTTTTTTGCATTCCTTATTGCCATTATGGCCTTCACCTTCGGA TATGAGTACGTGGTGGCGAGGCCTGCTCANGGAGCACTTCTTAGGGGCCTGTTCCTGCCC TCCTGTTCTGGCTGCGGCCAGCCCGAGCTGCTCCAGGCCGTGGGCATCGTTGGCGCCATC ATCATGCCCCACAACATCTACCTGCACTCGGCCCTGGTCAAGTCTCGAGAGGTAGACCGG ACCCGCCGGGAGGACATCCGAGAAGCCAACATGTACTTCCTGATTGAATCCACCATCGCC CTGTTTGTCTCCTTCTTCATCAACCTCTTTGTCATGGCTGTCTTTGGGCAAGCCTTCTAC CAGCAAACCAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 147-253, - strand, RNAz p=0.782449 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 147-253, - strand, RNAz p=0.782449 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 147-298, gnl|bosTau2|chr2 (59692197-59692046) | |
| 147-298, gnl|canFam2|chr37 (28038719-28038823) | |
| 147-298, gnl|dasNov1|scaffold_44161 (2301-2404) | |
| 147-298, gnl|hg17|chr2 (219073172-219073282) | |
| 147-298, gnl|Hg17|chr2 (219073173-219073331) | |
| 147-298, gnl|loxAfr1|scaffold_43300 (14763-14660) | |
| 147-298, gnl|mm7|chr1 (74615373-74615476) | |
| 147-298, gnl|Mm7|chr1 (74615374-74615525) | |
| 147-298, gnl|monDom2|scaffold_39 (2246058-2245957) | |
| 147-298, gnl|oryCun1|scaffold_167829 (517-422) | |
| 147-298, gnl|panTro1|chr13 (109232631-109232741) | |
| 147-298, gnl|rheMac2|chr12 (82216824-82216925) | |
| 147-298, gnl|rn3|chr9 (73862188-73862291) | |
| 304-419, gnl|bosTau2|chr5 (18740467-18740352) | |
| 304-419, gnl|Hg17|chr12 (49685477-49685362) | |
| 304-419, gnl|Mm7|chr15 (100394561-100394446) | |
| 421-542, gnl|bosTau2|chr2 (59690584-59690463) | |
| 421-542, gnl|canFam2|chr37 (28040023-28040172) | |
| 421-542, gnl|dasNov1|scaffold_44161 (3613-3764) | |
| 421-542, gnl|echTel1|scaffold_299659 (40043-40191) | |
| 421-542, gnl|fr1|chrUn (248116308-248116161) | |
| 421-542, gnl|hg17|chr2 (219075355-219075505) | |
| 421-542, gnl|Hg17|chr2 (219075375-219075496) | |
| 421-542, gnl|loxAfr1|scaffold_43300 (13385-13235) | |
| 421-542, gnl|mm7|chr1 (74616811-74616960) | |
| 421-542, gnl|Mm7|chr1 (74616830-74616951) | |
| 421-542, gnl|monDom2|scaffold_39 (2242285-2242138) | |
| 421-542, gnl|oryCun1|scaffold_163679 (5772-5622) | |
| 421-542, gnl|panTro1|chr13 (109234850-109235000) | |
| 421-542, gnl|rheMac2|chr12 (82219099-82219249) | |
| 421-542, gnl|rn3|chr9 (73863640-73863789) | |
| 421-542, gnl|tetNig1|chr11 (2120314-2120176) | |
| 421-542, gnl|xenTro1|scaffold_31 (1537806-1537945) | |
| 941-1092, gnl|bosTau2|chr2 (59687159-59687008) | |
| 941-1092, gnl|canFam2|chr37 (28042899-28043088) | |
| 941-1092, gnl|dasNov1|scaffold_15994 (43579-43401) | |
| 941-1092, gnl|echTel1|scaffold_299659 (43194-43381) | |
| 941-1092, gnl|fr1|chrUn (248114337-248114191) | |
| 941-1092, gnl|galGal2|chr7 (23285883-23285708) | |
| 941-1092, gnl|hg17|chr2 (219080071-219080262) | |
| 941-1092, gnl|Hg17|chr2 (219080096-219080247) | |
| 941-1092, gnl|loxAfr1|scaffold_43300 (10026-9838) | |
| 941-1092, gnl|mm7|chr1 (74621382-74621573) | |
| 941-1092, gnl|Mm7|chr1 (74621407-74621558) | |
| 941-1092, gnl|monDom2|scaffold_39 (2236226-2236018) | |
| 941-1092, gnl|oryCun1|scaffold_162522 (4852-4661) | |
| 941-1092, gnl|panTro1|chr13 (109239558-109239749) | |
| 941-1092, gnl|rheMac2|chr12 (82224134-82224325) | |
| 941-1092, gnl|rn3|chr9 (73868362-73868549) | |
| 941-1092, gnl|tetNig1|chr11 (2119342-2119174) | |
| 941-1092, gnl|xenTro1|scaffold_31 (1547593-1547775) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-298, gnl|bosTau2|chr2 (59692197-59692046) | |
| 147-298, gnl|canFam2|chr37 (28038719-28038823) | |
| 147-298, gnl|dasNov1|scaffold_44161 (2301-2404) | |
| 147-298, gnl|hg17|chr2 (219073172-219073282) | |
| 147-298, gnl|Hg17|chr2 (219073173-219073331) | |
| 147-298, gnl|loxAfr1|scaffold_43300 (14763-14660) | |
| 147-298, gnl|mm7|chr1 (74615373-74615476) | |
| 147-298, gnl|Mm7|chr1 (74615374-74615525) | |
| 147-298, gnl|monDom2|scaffold_39 (2246058-2245957) | |
| 147-298, gnl|oryCun1|scaffold_167829 (517-422) | |
| 147-298, gnl|panTro1|chr13 (109232631-109232741) | |
| 147-298, gnl|rheMac2|chr12 (82216824-82216925) | |
| 147-298, gnl|rn3|chr9 (73862188-73862291) | |
| 304-419, gnl|bosTau2|chr5 (18740467-18740352) | |
| 304-419, gnl|Hg17|chr12 (49685477-49685362) | |
| 304-419, gnl|Mm7|chr15 (100394561-100394446) | |
| 421-542, gnl|bosTau2|chr2 (59690584-59690463) | |
| 421-542, gnl|canFam2|chr37 (28040023-28040172) | |
| 421-542, gnl|dasNov1|scaffold_44161 (3613-3764) | |
| 421-542, gnl|echTel1|scaffold_299659 (40043-40191) | |
| 421-542, gnl|fr1|chrUn (248116308-248116161) | |
| 421-542, gnl|hg17|chr2 (219075355-219075505) | |
| 421-542, gnl|Hg17|chr2 (219075375-219075496) | |
| 421-542, gnl|loxAfr1|scaffold_43300 (13385-13235) | |
| 421-542, gnl|mm7|chr1 (74616811-74616960) | |
| 421-542, gnl|Mm7|chr1 (74616830-74616951) | |
| 421-542, gnl|monDom2|scaffold_39 (2242285-2242138) | |
| 421-542, gnl|oryCun1|scaffold_163679 (5772-5622) | |
| 421-542, gnl|panTro1|chr13 (109234850-109235000) | |
| 421-542, gnl|rheMac2|chr12 (82219099-82219249) | |
| 421-542, gnl|rn3|chr9 (73863640-73863789) | |
| 421-542, gnl|tetNig1|chr11 (2120314-2120176) | |
| 421-542, gnl|xenTro1|scaffold_31 (1537806-1537945) | |
| 941-1092, gnl|bosTau2|chr2 (59687159-59687008) | |
| 941-1092, gnl|canFam2|chr37 (28042899-28043088) | |
| 941-1092, gnl|dasNov1|scaffold_15994 (43579-43401) | |
| 941-1092, gnl|echTel1|scaffold_299659 (43194-43381) | |
| 941-1092, gnl|fr1|chrUn (248114337-248114191) | |
| 941-1092, gnl|galGal2|chr7 (23285883-23285708) | |
| 941-1092, gnl|hg17|chr2 (219080071-219080262) | |
| 941-1092, gnl|Hg17|chr2 (219080096-219080247) | |
| 941-1092, gnl|loxAfr1|scaffold_43300 (10026-9838) | |
| 941-1092, gnl|mm7|chr1 (74621382-74621573) | |
| 941-1092, gnl|Mm7|chr1 (74621407-74621558) | |
| 941-1092, gnl|monDom2|scaffold_39 (2236226-2236018) | |
| 941-1092, gnl|oryCun1|scaffold_162522 (4852-4661) | |
| 941-1092, gnl|panTro1|chr13 (109239558-109239749) | |
| 941-1092, gnl|rheMac2|chr12 (82224134-82224325) | |
| 941-1092, gnl|rn3|chr9 (73868362-73868549) | |
| 941-1092, gnl|tetNig1|chr11 (2119342-2119174) | |
| 941-1092, gnl|xenTro1|scaffold_31 (1547593-1547775) |