Non-Coding RNA Search

Ss1.1-Spl1-SPL01B120075.5

Sequence:


               
               TACTAACATTTTTGGACTCTCAGGATATCTCTCCTTAGGCAGGATTATCTGGAATCAACC
TCGATGCATCAGTGTTTGTCCTTTTCTGAAGAGCAAGGATATTCATTCACTCTCTCTGCC
CACTCACTTTCCTAGCTAATAATCCCTGGCCAGCAGGAAGTTCTTCTTGTGTCTAATGTG
AACCCTTCCTGCTTCTGCATGGGGAAAAAGAAAAAACTGTCTTATTTGGGGCTGGAACTG
AATAAGGCTCTGGTATTCTTTATATCTGGATAAATCACATTTTCCCAAATAGGTTCATTT
TTCTCTGACTTCAAGGCAGTGTTCCCCTATGAGAGAGAAGCAAGCCCAGCTCATAGGTGA
GACTGTCTCTGAGGTCCCAGTTGAGCCAAAGCAGGTTGTCTCTTTAGGGGTCAGATGTGC
TTTCCAAATGACAAGGCTGTCTTGCCGGTGCCCCAGTCAGGACCAGAAGGATGCTGTTTC
CAGGAGCCTGGCTGAGTCACCATGCCCTTACTTGTCCAGTTTCCCCTTCTCAGCAGCGCA
GAGCAGCTGGAGACTGGTAGGCTCTGGGGCCCTTCACTGGGCCACTGTCTCTGACTGATG
GCCTAAGCCCTCCCCCCACCACCACTTCCGCAAGGGCCGGGCTGAGACAGGCCCTGGCAT
CTGCTGTTGAACCAGGTACCTAGAGCGGAGATGGCAGGGGTAGGCCTTCTGCAGTCAGGA
CCTGCCATAGTTTCAGAGCAGGAATATTTTCCTCCCGGAATCACACAGAGATGTCCATAA
CTGGGCCATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTAACATTTTTGGACTCTCAGGATATCTCTCCTTAGGCAGGATTATCTGGAATCAACC
TCGATGCATCAGTGTTTGTCCTTTTCTGAAGAGCAAGGATATTCATTCACTCTCTCTGCC
CACTCACTTTCCTAGCTAATAATCCCTGGCCAGCAGGAAGTTCTTCTTGTGTCTAATGTG
AACCCTTCCTGCTTCTGCATGGGGAAAAAGAAAAAACTGTCTTATTTGGGGCTGGAACTG
AATAAGGCTCTGGTATTCTTTATATCTGGATAAATCACATTTTCCCAAATAGGTTCATTT
TTCTCTGACTTCAAGGCAGTGTTCCCCTATGAGAGAGAAGCAAGCCCAGCTCATAGGTGA
GACTGTCTCTGAGGTCCCAGTTGAGCCAAAGCAGGTTGTCTCTTTAGGGGTCAGATGTGC
TTTCCAAATGACAAGGCTGTCTTGCCGGTGCCCCAGTCAGGACCAGAAGGATGCTGTTTC
CAGGAGCCTGGCTGAGTCACCATGCCCTTACTTGTCCAGTTTCCCCTTCTCAGCAGCGCA
GAGCAGCTGGAGACTGGTAGGCTCTGGGGCCCTTCACTGGGCCACTGTCTCTGACTGATG
GCCTAAGCCCTCCCCCCACCACCACTTCCGCAAGGGCCGGGCTGAGACAGGCCCTGGCAT
CTGCTGTTGAACCAGGTACCTAGAGCGGAGATGGCAGGGGTAGGCCTTCTGCAGTCAGGA
CCTGCCATAGTTTCAGAGCAGGAATATTTTCCTCCCGGAATCACACAGAGATGTCCATAA
CTGGGCCATGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               498-617, + strand, RNAz p=0.850603

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-617, + strand, RNAz p=0.850603

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               5-315, gnl|bosTau2|chr3 (5286056-5285743)
               

               
               5-315, gnl|Hg17|chr1 (154789027-154789350)
               

               
               5-315, gnl|Mm7|chr3 (87275388-87275084)
               


               
               348-690, gnl|bosTau2|chr3 (5285735-5285387)
               

               
               348-690, gnl|Hg17|chr1 (154789358-154789696)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-315, gnl|bosTau2|chr3 (5286056-5285743)
               

               
               5-315, gnl|Hg17|chr1 (154789027-154789350)
               

               
               5-315, gnl|Mm7|chr3 (87275388-87275084)
               


               
               348-690, gnl|bosTau2|chr3 (5285735-5285387)
               

               
               348-690, gnl|Hg17|chr1 (154789358-154789696)

	5-315, gnl\|bosTau2\|chr3 (5286056-5285743)
	5-315, gnl\|Hg17\|chr1 (154789027-154789350)
	5-315, gnl\|Mm7\|chr3 (87275388-87275084)

	348-690, gnl\|bosTau2\|chr3 (5285735-5285387)
	348-690, gnl\|Hg17\|chr1 (154789358-154789696)