Non-Coding RNA Search

Ss1.1-Spl1-SPL01C050032.5

Sequence:


               
               GAATTTCAAGATGGGAGTTCCTGCTGTGGTTTCTTGAGAGCACTGGGGCACAGGTTCGAT
CCCCCACCCAGCACAGTGGGTTAAGGATCTGGCGTTGCCGCAACTTCAGCTTAGGTTGCA
ACTGTAGCTCGGCTCTGATCCCTGGCCCAGGAGCTCCATATGCCCCAGGGTGGCCAAAAA
AGAAAAAAAAAAATTTCAAGGTGGTGGCAACAGAGCATTAAACCAAAGGTGGAACCCTTC
TGAGCACAGAGCTCTGTGGGCCTGCCCAGGTCACCTGCCCGTAAGGCCAGCCCCGAGGGT
CACCAGCATTCATCGAATGCTTGCTGGAACGCCAGACCCTGTGCTAGGCGCTCACCACGC
ATGATCTCATTCCTTCCTCTCAGCAGCCCTATTATCCCTGTTGTGCAGACGAGGAAATTG
AAGGATTAGACAAGCCGCATAACTTGCTGAGGTCACCAGCTCTTAAGGGCTAGAGCAGGG
GACAGAACCCAGCCTGTCTACAGAGCCTGGGCTCTTAACCACCCCGGGCCGCTCCAGCCC
ACAGGGGTAGGGTGGTTGCTGGGCAAGGCAGCTGCTTCCTGTCCCCTTCTTCTGGCCTAT
CAGGGGCAGGAAGGAAGATGAGGCAAGAAACAGCAGCTGACAGTGCAGCAACAATGGCAG
TGGTGGTGAGGGCGGCCAACCCAGACAGAAGCGCTGGGTGGAGACCGTGTGAGATGCACC
CAGGGGCTGTGTGAGCTGGANGCAGCTGATAGACACCGCAGCTGTGCCCTCCGCCCTCTC
GCCCGGTGTGGGCATCGGGGAAACCTCCCGCTCCTCATATCACCTCCAGCTCTGCCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTTCAAGATGGGAGTTCCTGCTGTGGTTTCTTGAGAGCACTGGGGCACAGGTTCGAT
CCCCCACCCAGCACAGTGGGTTAAGGATCTGGCGTTGCCGCAACTTCAGCTTAGGTTGCA
ACTGTAGCTCGGCTCTGATCCCTGGCCCAGGAGCTCCATATGCCCCAGGGTGGCCAAAAA
AGAAAAAAAAAAATTTCAAGGTGGTGGCAACAGAGCATTAAACCAAAGGTGGAACCCTTC
TGAGCACAGAGCTCTGTGGGCCTGCCCAGGTCACCTGCCCGTAAGGCCAGCCCCGAGGGT
CACCAGCATTCATCGAATGCTTGCTGGAACGCCAGACCCTGTGCTAGGCGCTCACCACGC
ATGATCTCATTCCTTCCTCTCAGCAGCCCTATTATCCCTGTTGTGCAGACGAGGAAATTG
AAGGATTAGACAAGCCGCATAACTTGCTGAGGTCACCAGCTCTTAAGGGCTAGAGCAGGG
GACAGAACCCAGCCTGTCTACAGAGCCTGGGCTCTTAACCACCCCGGGCCGCTCCAGCCC
ACAGGGGTAGGGTGGTTGCTGGGCAAGGCAGCTGCTTCCTGTCCCCTTCTTCTGGCCTAT
CAGGGGCAGGAAGGAAGATGAGGCAAGAAACAGCAGCTGACAGTGCAGCAACAATGGCAG
TGGTGGTGAGGGCGGCCAACCCAGACAGAAGCGCTGGGTGGAGACCGTGTGAGATGCACC
CAGGGGCTGTGTGAGCTGGANGCAGCTGATAGACACCGCAGCTGTGCCCTCCGCCCTCTC
GCCCGGTGTGGGCATCGGGGAAACCTCCCGCTCCTCATATCACCTCCAGCTCTGCCTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-637, + strand, RNAz p=0.999037

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-637, + strand, RNAz p=0.999037

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               457-637, BP438778 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP438778.1|), blast E-value=0, identity=100% 
               

               
               457-637, BW974705 full-length enriched swine cDNA library, adult periphral 
(dbj|BW974705.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               457-637, BP438778 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP438778.1|), blast E-value=0, identity=100% 
               

               
               457-637, BW974705 full-length enriched swine cDNA library, adult periphral 
(dbj|BW974705.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               192-840, gnl|bosTau2|chr23 (13449772-13450432)
               

               
               192-840, gnl|Hg17|chr6 (42105014-42104021)
               

               
               192-840, gnl|Mm7|chr17 (45659553-45660190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-840, gnl|bosTau2|chr23 (13449772-13450432)
               

               
               192-840, gnl|Hg17|chr6 (42105014-42104021)
               

               
               192-840, gnl|Mm7|chr17 (45659553-45660190)

	457-637, BP438778 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP438778.1\|), blast E-value=0, identity=100%
	457-637, BW974705 full-length enriched swine cDNA library, adult periphral (dbj\|BW974705.1\|), blast E-value=0, identity=100%

	192-840, gnl\|bosTau2\|chr23 (13449772-13450432)
	192-840, gnl\|Hg17\|chr6 (42105014-42104021)
	192-840, gnl\|Mm7\|chr17 (45659553-45660190)