Non-Coding RNA Search

Ss1.1-Spl1-SPL01C120051.5

Sequence:


               
               ACGCAGCGGGTCCTGAAAGCGGCTCCGGGGCGGCGCGGTGGCGCACTGTGCGCGCCGAGC
AGGCGGAGGGCTAGCGCTGGAGGCGGCGGCGGCGGAAGCGCGGGCAGTCAAAGCCGACAG
ACGTTGCATCTCAGAACCGGCAGTCCCCGGCGGCCTTGGTGGAGACCTTACTCTCTCTTC
TCTGTCCCTCGCTCTATGCCTGGAGCAGGCGCGGCGGCCGTCCCGGAAGAGGCAACTGAA
AGACAGTCGAATCAGACCCCTGGGAGAAAGCAAATGAAGCTCGAATAGTTGGTGGGTGCG
AGACAGATACTCAGGCGAGAAGACCGTCGCTGTTGTCCCCATTCCTGGTCTCAGCCATGG
GGGAGCAGCAGGGGACGCGGGAACTTTGAAGGCAGTGGGTCCCAGGGTCTGAGGGCTGTA
GGCTCCGGGAGGCTCCGGAGTCGCGGCCCTAACGTCAGTGGCGTAAAAGCGTCTTGGAAC
CCGCCGGGACCCCAGCGCCGCCAGAGAGGAAGTTCTTTGCAACTTCGTCGGAGACGTCGG
AGAGTCGGGTGGGGAGAGATTGAAGCCGCAAGTCAGAGCCCCACAAACTCAAAGAAGCAG
AAAGAGAAAGGATCCGGTGGGAACTGGGGGATCGAGGAAAGACTCCAGAGGCATCGAGGC
CTCGGAACCAGCCTGGCAGCCCGTGGGCCTCGCTGTCCCCCGAGTGAAGCCAAGGGCTGT
GTGTCCCGCAGGCCTCCTTGAAGCCGCTCGAACAGGAGGCCGGGGGTGGGGGCTGCAGGC
CGTCCCGGAGGCGGGCCCCTAAAATATGCCCCCGAAGCTGCGGGCGCCTTGGCCGCAGCT
ACTCCCGGCAGAGTGCGGAGCCGCCGCCTGAGCCAACCTGGGAGGGAACCCACCAGGAGT
TGGGCGCACCGCTCCCAGCCGGACTACACTAGCTCCGTTTCCCGCCTCTAGGCGCAGCTC
TCGGCAATCTGCGGCAGGGCGGCTTTGAGAGAGGCCCCGAAGCTCCAGCAGTGTTTTCTG
AGCCCAGCTCGCACAGTCCCCGGCCTGGCGGCGAGGCTCTTTAGCCGCGCTGGGCAGCCC
CTTGGCGCCGGGAGGCGGCAGCCTGGGCCGGCCTGCAGTCTGGAGCGCCCCGATGGAAAT
ACACTGTAAGCACGACCCGTTTGCATCCATGCATAGACATGGAGGAGTGAATCAGCTTGG
GGGGGTTTTTGTGAACGGCCGGCCACTCCCGGATGTAGTCCGCCAAAGGATAGTGGAACT
TGCTCATCAAGGTGTCAGGCCCTGCGACATCTCCAGGCAGCTTCGAGTCAGCCATGGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCAGCGGGTCCTGAAAGCGGCTCCGGGGCGGCGCGGTGGCGCACTGTGCGCGCCGAGC
AGGCGGAGGGCTAGCGCTGGAGGCGGCGGCGGCGGAAGCGCGGGCAGTCAAAGCCGACAG
ACGTTGCATCTCAGAACCGGCAGTCCCCGGCGGCCTTGGTGGAGACCTTACTCTCTCTTC
TCTGTCCCTCGCTCTATGCCTGGAGCAGGCGCGGCGGCCGTCCCGGAAGAGGCAACTGAA
AGACAGTCGAATCAGACCCCTGGGAGAAAGCAAATGAAGCTCGAATAGTTGGTGGGTGCG
AGACAGATACTCAGGCGAGAAGACCGTCGCTGTTGTCCCCATTCCTGGTCTCAGCCATGG
GGGAGCAGCAGGGGACGCGGGAACTTTGAAGGCAGTGGGTCCCAGGGTCTGAGGGCTGTA
GGCTCCGGGAGGCTCCGGAGTCGCGGCCCTAACGTCAGTGGCGTAAAAGCGTCTTGGAAC
CCGCCGGGACCCCAGCGCCGCCAGAGAGGAAGTTCTTTGCAACTTCGTCGGAGACGTCGG
AGAGTCGGGTGGGGAGAGATTGAAGCCGCAAGTCAGAGCCCCACAAACTCAAAGAAGCAG
AAAGAGAAAGGATCCGGTGGGAACTGGGGGATCGAGGAAAGACTCCAGAGGCATCGAGGC
CTCGGAACCAGCCTGGCAGCCCGTGGGCCTCGCTGTCCCCCGAGTGAAGCCAAGGGCTGT
GTGTCCCGCAGGCCTCCTTGAAGCCGCTCGAACAGGAGGCCGGGGGTGGGGGCTGCAGGC
CGTCCCGGAGGCGGGCCCCTAAAATATGCCCCCGAAGCTGCGGGCGCCTTGGCCGCAGCT
ACTCCCGGCAGAGTGCGGAGCCGCCGCCTGAGCCAACCTGGGAGGGAACCCACCAGGAGT
TGGGCGCACCGCTCCCAGCCGGACTACACTAGCTCCGTTTCCCGCCTCTAGGCGCAGCTC
TCGGCAATCTGCGGCAGGGCGGCTTTGAGAGAGGCCCCGAAGCTCCAGCAGTGTTTTCTG
AGCCCAGCTCGCACAGTCCCCGGCCTGGCGGCGAGGCTCTTTAGCCGCGCTGGGCAGCCC
CTTGGCGCCGGGAGGCGGCAGCCTGGGCCGGCCTGCAGTCTGGAGCGCCCCGATGGAAAT
ACACTGTAAGCACGACCCGTTTGCATCCATGCATAGACATGGAGGAGTGAATCAGCTTGG
GGGGGTTTTTGTGAACGGCCGGCCACTCCCGGATGTAGTCCGCCAAAGGATAGTGGAACT
TGCTCATCAAGGTGTCAGGCCCTGCGACATCTCCAGGCAGCTTCGAGTCAGCCATGGTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18448647|gb|AAL69891.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18448647|gb|AAL69891.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               646-765, - strand, RNAz p=0.930823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               646-765, - strand, RNAz p=0.930823

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-795, gnl|bosTau2|chr8 (29858955-29858142)
               

               
               1-795, gnl|Hg17|chr9 (37017695-37016941)
               

               
               1-795, gnl|Mm7|chr4 (44718298-44717598)
               


               
               1178-1320, gnl|bosTau2|chr11 (33472118-33472260)
               

               
               1178-1320, gnl|Hg17|chr2 (113720724-113720582)
               

               
               1178-1320, gnl|Mm7|chr2 (24452040-24451898)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-795, gnl|bosTau2|chr8 (29858955-29858142)
               

               
               1-795, gnl|Hg17|chr9 (37017695-37016941)
               

               
               1-795, gnl|Mm7|chr4 (44718298-44717598)
               


               
               1178-1320, gnl|bosTau2|chr11 (33472118-33472260)
               

               
               1178-1320, gnl|Hg17|chr2 (113720724-113720582)
               

               
               1178-1320, gnl|Mm7|chr2 (24452040-24451898)

	1-795, gnl\|bosTau2\|chr8 (29858955-29858142)
	1-795, gnl\|Hg17\|chr9 (37017695-37016941)
	1-795, gnl\|Mm7\|chr4 (44718298-44717598)

	1178-1320, gnl\|bosTau2\|chr11 (33472118-33472260)
	1178-1320, gnl\|Hg17\|chr2 (113720724-113720582)
	1178-1320, gnl\|Mm7\|chr2 (24452040-24451898)