Non-Coding RNA Search

Ss1.1-Spl1-SPL01D040087.5

Sequence:


               
               ACTTTTTCATGTCAACCAGTATAGAGTACGTTATTTATAAATGCTGCAGAGGATTCCAAG
GAGTGAAAGTAGCGTCACTTATTTAAGGGACCCCCTATCGGGCTGTTTACTTTTTTTTGT
CTTTTTGCCTTTTCTGGGAACTTCTACATGCCATGAGTGCAGCCCTAAAAAGACAAAAAA
GAAAAAAGAAGACAGAACGTTCTGTCATGCCAAAACTTGCTTTATGATGGATACACTTAA
AACTCTTTTTATGGAACAGCTATACAAGTAATTGGCTGTTTCCCCTCCTGGGCAGGTGTT
ATCTGTTTACTTGTGGTTTGAGACCACTTTTGAATTTACCCTTAAGGACTAATGCTTGGT
GTCTGAGTGGCTTCAGGGTATGTGCACGTGTTTTGGGGAGTTTGAAAGGGGTTACGGCGT
GTCCCGTGTCGTGGTGACAGGGGTTCTCTTTTACTTCCTGGGTGGGTCCACGCCCTGGCT
GCGTCCCTGCTGTTTCTCTTGTTACCCTCTCTCTCCTGCCTCCTAGGCCGTTGGCATCCA
CTGTGAATGATAAGCTGGAGCTGCAGGAGTGTCTGGAGCACGGCAGAATAGCCAAGGTTA
GCCCCAGCGTCGAAGCCCTCTGCTGGGGGTAAGGAGAAGGGCAGAGGCAGGATGAGCTGG
AGCAGCGCCAGGGCTGTGTCCCGCCTGCCCTCGAGGGCCCCCTCTAAGTTGCCAAGGGGT
TGTGCATCCGGTTGGCCAGAGGGAGGGTCCGGGGGAAAGCCTGGAGGGCAGGGAGAGAGG
TCTGGAACCCTCGCTGGCCTAAGGCCTTCCTTGTTGAGCGTTGCTCACCGGTCCTGTGGG
AGGTGGATGCCAAGAAGTCTTTGCCAGGGATCTGCTGGGGCTTTTGAATTTGTTGGCCAG
GACCTATTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTTTCATGTCAACCAGTATAGAGTACGTTATTTATAAATGCTGCAGAGGATTCCAAG
GAGTGAAAGTAGCGTCACTTATTTAAGGGACCCCCTATCGGGCTGTTTACTTTTTTTTGT
CTTTTTGCCTTTTCTGGGAACTTCTACATGCCATGAGTGCAGCCCTAAAAAGACAAAAAA
GAAAAAAGAAGACAGAACGTTCTGTCATGCCAAAACTTGCTTTATGATGGATACACTTAA
AACTCTTTTTATGGAACAGCTATACAAGTAATTGGCTGTTTCCCCTCCTGGGCAGGTGTT
ATCTGTTTACTTGTGGTTTGAGACCACTTTTGAATTTACCCTTAAGGACTAATGCTTGGT
GTCTGAGTGGCTTCAGGGTATGTGCACGTGTTTTGGGGAGTTTGAAAGGGGTTACGGCGT
GTCCCGTGTCGTGGTGACAGGGGTTCTCTTTTACTTCCTGGGTGGGTCCACGCCCTGGCT
GCGTCCCTGCTGTTTCTCTTGTTACCCTCTCTCTCCTGCCTCCTAGGCCGTTGGCATCCA
CTGTGAATGATAAGCTGGAGCTGCAGGAGTGTCTGGAGCACGGCAGAATAGCCAAGGTTA
GCCCCAGCGTCGAAGCCCTCTGCTGGGGGTAAGGAGAAGGGCAGAGGCAGGATGAGCTGG
AGCAGCGCCAGGGCTGTGTCCCGCCTGCCCTCGAGGGCCCCCTCTAAGTTGCCAAGGGGT
TGTGCATCCGGTTGGCCAGAGGGAGGGTCCGGGGGAAAGCCTGGAGGGCAGGGAGAGAGG
TCTGGAACCCTCGCTGGCCTAAGGCCTTCCTTGTTGAGCGTTGCTCACCGGTCCTGTGGG
AGGTGGATGCCAAGAAGTCTTTGCCAGGGATCTGCTGGGGCTTTTGAATTTGTTGGCCAG
GACCTATTGCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               536-694, - strand, RNAz p=0.999235

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-694, - strand, RNAz p=0.999235

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               614-763, - strand, RNAmicro p=0.99978
               

               
               539-648, + strand, RNAmicro p=0.994943

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               614-763, - strand, RNAmicro p=0.99978
               

               
               539-648, + strand, RNAmicro p=0.994943

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               189-911, gnl|bosTau2|chr11 (53959618-53958906)
               

               
               189-911, gnl|Hg17|chr2 (25371911-25371150)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-911, gnl|bosTau2|chr11 (53959618-53958906)
               

               
               189-911, gnl|Hg17|chr2 (25371911-25371150)

	614-763, - strand, RNAmicro p=0.99978
	539-648, + strand, RNAmicro p=0.994943

	189-911, gnl\|bosTau2\|chr11 (53959618-53958906)
	189-911, gnl\|Hg17\|chr2 (25371911-25371150)