Non-Coding RNA Search

Ss1.1-Spl1-SPL01E010043.5

Sequence:


               
               AAAAAAAAAAAAAAAAAAGAACCCGCCTCCGCNGTCCTGCCGNGACCCGCAAANGGGTCA
CTTCCCNCTCTCTCCCCTCTCCGCTTTCCTCAAGTGTCAAGTGTTAGGCGGGCTGTGGGG
CCAACGGGCTCCAAAAGTCTTCGTCTTAGGATCGCGGGCCCCAGCCGCCACCCTTCCACC
GCGTCTGGGCCGGTCGCCCCCTCCGTTCGTTCAGCTCCGCCAGCGCCCCGAGACAATTCT
CGCCTTGTCTAGGGCGCCGGCATCTCGAGTTTTCTGTAACCTTCGGCTACGCCTTTTTTC
CAGGGCGGAGCCCCAACACGGCTCCTCCTTGCAGCGGGCCGCACAGCAGCCCCGGTCCTT
TTTCCCAGAGCCCCTCTCCGGAGTTGGGATCCAGGCGCACAGCCCGAGCTGCCTGCCGGC
CTGTGTGCCCCTCGGCTCTCTCCACGCCATGGCCTCGGGCCCGGGACTCCGGCTCCTGCT
GCTCCCGCTGCTGGTGCTGTCGCCTCCTCCTGCGGCCTCGGCCTCAGATCGCCCCCGGGG
TAGCGACCCCGTCAACCCAGATGAACTGCTAGTGATCACCGTGGCCACGGCCGAGACAGA
GGGATACCGGCGTTTCCTGCGATCAGCAGAGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAGAACCCGCCTCCGCNGTCCTGCCGNGACCCGCAAANGGGTCA
CTTCCCNCTCTCTCCCCTCTCCGCTTTCCTCAAGTGTCAAGTGTTAGGCGGGCTGTGGGG
CCAACGGGCTCCAAAAGTCTTCGTCTTAGGATCGCGGGCCCCAGCCGCCACCCTTCCACC
GCGTCTGGGCCGGTCGCCCCCTCCGTTCGTTCAGCTCCGCCAGCGCCCCGAGACAATTCT
CGCCTTGTCTAGGGCGCCGGCATCTCGAGTTTTCTGTAACCTTCGGCTACGCCTTTTTTC
CAGGGCGGAGCCCCAACACGGCTCCTCCTTGCAGCGGGCCGCACAGCAGCCCCGGTCCTT
TTTCCCAGAGCCCCTCTCCGGAGTTGGGATCCAGGCGCACAGCCCGAGCTGCCTGCCGGC
CTGTGTGCCCCTCGGCTCTCTCCACGCCATGGCCTCGGGCCCGGGACTCCGGCTCCTGCT
GCTCCCGCTGCTGGTGCTGTCGCCTCCTCCTGCGGCCTCGGCCTCAGATCGCCCCCGGGG
TAGCGACCCCGTCAACCCAGATGAACTGCTAGTGATCACCGTGGCCACGGCCGAGACAGA
GGGATACCGGCGTTTCCTGCGATCAGCAGAGTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               175-474, - strand, RNAz p=0.99785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               175-474, - strand, RNAz p=0.99785

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               387-488, - strand, RNAmicro p=0.962295

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               387-488, - strand, RNAmicro p=0.962295

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-564, gnl|bosTau2|chr25 (30486046-30485498)
               

               
               16-564, gnl|Hg17|chr7 (100454367-100453878)
               

               
               16-564, gnl|Mm7|chr5 (135958246-135958717)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-564, gnl|bosTau2|chr25 (30486046-30485498)
               

               
               16-564, gnl|Hg17|chr7 (100454367-100453878)
               

               
               16-564, gnl|Mm7|chr5 (135958246-135958717)

	16-564, gnl\|bosTau2\|chr25 (30486046-30485498)
	16-564, gnl\|Hg17\|chr7 (100454367-100453878)
	16-564, gnl\|Mm7\|chr5 (135958246-135958717)