Non-Coding RNA Search

Ss1.1-Spl1-SPL01E120079.5

Sequence:


               
               ATCTGCTACACAGTAGGTATATCCATAAACTCTTATTGAAGACTGAATACCTCAAAAGGA
TAAATTTTTTAGGTGGGCAGTAATGAGGTAAGATAATTTAGGCGCCTAATGATTTTTGGC
AAGGTGGCATCAGCATTTTGAGGGAAAAAAAAAAGTTATTCTCATATTTCCTTTTTAAAA
CTAATTTTGATTAAAGTTATAAAATCTAAAACCTTACTGTTCTTTGTGCTTTTAAGAGCT
GTTCCGAGACCTCATTATTTTATTTATAAGCCTAGCAATTTTTAACAATCACTTTTAAGG
GGACCCTTTTATTAACGTTTGGCCTGATTTGCAAACTTAGCTAATTAAACTCCTTCAAAC
ATTTTAAACTGCATTTGTAAAGGAAATCGAACATATTAAATTTATAAGTACTCAATTGCC
TGATTCCACAAACAAGCCTCCCAGAGCACTTAAGTAATTCTTATAAATCTAATTAAGCTT
ATAAGTATGTTACACCCACCGGCTTCTAAGTTTTCTTATACTGTATAGACATGAGTGGGA
TTTTTGACTTAAAATCAAAGTCCAGATTGGTTATTCTGCTTTTTAAGTTGATGTTTCAAG
ACTGGTTGTTATTCTCATCGACCAATTCTCTTAATTGTAACAAATATTTAAATTACGAGA
TCTGCATTGATTTCTTCTTTTCAAAGAAAAAAATTATTTTGACAGATCTCATTTTCTTAA
ACATTTCTGTGCTTTATTTTAAACCTTCTTTGGGTGAAAAAGTGCTCCCTCACATGGTCC
AAGAAAAGAAAGAAGGCTAGCCCTCCCCTCTGCCTTCCAGAACCTTCCACGCGCCAGGGC
TCTTTGGAAACTTCTGTTCGCTGGCATCAGCGTCGTGGCCTGCCCGTGACTGTCCACAGA
TCCCCACCAGGCACTGGTCACTGTGTAAATGAGGCCACAGTTTAAAGAGGCGGATTTCCC
TTGTCCTGCATCTCTTAGATTAAAGGCAAATATGACGGCTTTTTCTGTCCACTCCCGGAG
ATCTGTATCCCCTACTCTCTGGCCGTCACTAAAATGGATTTTACATCTTAAAATAAGCAG
CTCTCTTTCTACGAGAGTCCAAAGACCTTGAAAGTCTGTAGGGTGGGAATAATCTCACAC
GCAGGCATATCTCAGAGGTGGAATTGGGGGTTTGGTTCCAGGCCACTACAACAAAGCCAA
TCCTGTGGTTAAAGCAAGTCACATTACAGTTTTTGGTTTCCTAGGGCCTGTGAACGTCAT
GTTTATACACTCCTGTAATCTAAGTGTGCACTAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGCTACACAGTAGGTATATCCATAAACTCTTATTGAAGACTGAATACCTCAAAAGGA
TAAATTTTTTAGGTGGGCAGTAATGAGGTAAGATAATTTAGGCGCCTAATGATTTTTGGC
AAGGTGGCATCAGCATTTTGAGGGAAAAAAAAAAGTTATTCTCATATTTCCTTTTTAAAA
CTAATTTTGATTAAAGTTATAAAATCTAAAACCTTACTGTTCTTTGTGCTTTTAAGAGCT
GTTCCGAGACCTCATTATTTTATTTATAAGCCTAGCAATTTTTAACAATCACTTTTAAGG
GGACCCTTTTATTAACGTTTGGCCTGATTTGCAAACTTAGCTAATTAAACTCCTTCAAAC
ATTTTAAACTGCATTTGTAAAGGAAATCGAACATATTAAATTTATAAGTACTCAATTGCC
TGATTCCACAAACAAGCCTCCCAGAGCACTTAAGTAATTCTTATAAATCTAATTAAGCTT
ATAAGTATGTTACACCCACCGGCTTCTAAGTTTTCTTATACTGTATAGACATGAGTGGGA
TTTTTGACTTAAAATCAAAGTCCAGATTGGTTATTCTGCTTTTTAAGTTGATGTTTCAAG
ACTGGTTGTTATTCTCATCGACCAATTCTCTTAATTGTAACAAATATTTAAATTACGAGA
TCTGCATTGATTTCTTCTTTTCAAAGAAAAAAATTATTTTGACAGATCTCATTTTCTTAA
ACATTTCTGTGCTTTATTTTAAACCTTCTTTGGGTGAAAAAGTGCTCCCTCACATGGTCC
AAGAAAAGAAAGAAGGCTAGCCCTCCCCTCTGCCTTCCAGAACCTTCCACGCGCCAGGGC
TCTTTGGAAACTTCTGTTCGCTGGCATCAGCGTCGTGGCCTGCCCGTGACTGTCCACAGA
TCCCCACCAGGCACTGGTCACTGTGTAAATGAGGCCACAGTTTAAAGAGGCGGATTTCCC
TTGTCCTGCATCTCTTAGATTAAAGGCAAATATGACGGCTTTTTCTGTCCACTCCCGGAG
ATCTGTATCCCCTACTCTCTGGCCGTCACTAAAATGGATTTTACATCTTAAAATAAGCAG
CTCTCTTTCTACGAGAGTCCAAAGACCTTGAAAGTCTGTAGGGTGGGAATAATCTCACAC
GCAGGCATATCTCAGAGGTGGAATTGGGGGTTTGGTTCCAGGCCACTACAACAAAGCCAA
TCCTGTGGTTAAAGCAAGTCACATTACAGTTTTTGGTTTCCTAGGGCCTGTGAACGTCAT
GTTTATACACTCCTGTAATCTAAGTGTGCACTAGCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               8-124, - strand, RNAz p=0.797359
               

               
               401-519, - strand, RNAz p=0.794552

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-124, - strand, RNAz p=0.797359
               

               
               401-519, - strand, RNAz p=0.794552

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               378-492, - strand, RNAmicro p=0.999865

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               378-492, - strand, RNAmicro p=0.999865

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-896, gnl|bosTau2|chr10 (68516924-68516032)
               

               
               8-896, gnl|Hg17|chr14 (88760670-88759749)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-896, gnl|bosTau2|chr10 (68516924-68516032)
               

               
               8-896, gnl|Hg17|chr14 (88760670-88759749)

	8-124, - strand, RNAz p=0.797359
	401-519, - strand, RNAz p=0.794552

	8-896, gnl\|bosTau2\|chr10 (68516924-68516032)
	8-896, gnl\|Hg17\|chr14 (88760670-88759749)