Non-Coding RNA Search

Ss1.1-Spl1-SPL01F010088.5

Sequence:


               
               ACATGCCCGTGAGTCACTCCAGATGTGCTCAAAAACAGAGTCTCTCTGTGGAAGCTCAGG
GCCCCAATCCCGGAGAGAGTAGCTTAACAGGTCCCACTCCTGCCCTCCCCAGGAGGCAGC
CCCCTGCCTCCACCCCTCTAGGGCAGGAGAGGGCATCTCAGCACGTCCGGAAAGGGAAGG
GAAGTAAGATCAATATTGTTGCACTGCGAGGACCAGTACAGGCATACCTGGGGCTCCTGG
GGTCCCACTGGTTGGAAGACGACTTTGCACCTTTTCGGAGGAAAAGATGTGTTGGAAGAC
GCTGCTGCTTCTGCTGTTGTGTTATGATGCTCAGGCCACTCTGTCCCACAGGTGGAGCAG
GGGTGAGTTGCTTTTGATTTATTTGATTGATGCTCCTTATTCTTTCCCCAATATGATTAG
GAAATTTGGGGGAGGGGGGTAAAAGTGGAGGGGGCAGGAGGAAGTTAGAAACCCTGCTCC
CTCCTTTTCTCTCCTTTCTGCCCATTGCTTTATGCTTCTCGACATGCTAAAGGGTAATGA
TACCAAAAAAATCAGAGCCGCTGAGGGAACTGGGTCAAGGTGGAGAAGGCAGAGAGCATC
CCTTTCTGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGCCCGTGAGTCACTCCAGATGTGCTCAAAAACAGAGTCTCTCTGTGGAAGCTCAGG
GCCCCAATCCCGGAGAGAGTAGCTTAACAGGTCCCACTCCTGCCCTCCCCAGGAGGCAGC
CCCCTGCCTCCACCCCTCTAGGGCAGGAGAGGGCATCTCAGCACGTCCGGAAAGGGAAGG
GAAGTAAGATCAATATTGTTGCACTGCGAGGACCAGTACAGGCATACCTGGGGCTCCTGG
GGTCCCACTGGTTGGAAGACGACTTTGCACCTTTTCGGAGGAAAAGATGTGTTGGAAGAC
GCTGCTGCTTCTGCTGTTGTGTTATGATGCTCAGGCCACTCTGTCCCACAGGTGGAGCAG
GGGTGAGTTGCTTTTGATTTATTTGATTGATGCTCCTTATTCTTTCCCCAATATGATTAG
GAAATTTGGGGGAGGGGGGTAAAAGTGGAGGGGGCAGGAGGAAGTTAGAAACCCTGCTCC
CTCCTTTTCTCTCCTTTCTGCCCATTGCTTTATGCTTCTCGACATGCTAAAGGGTAATGA
TACCAAAAAAATCAGAGCCGCTGAGGGAACTGGGTCAAGGTGGAGAAGGCAGAGAGCATC
CCTTTCTGACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-153, - strand, RNAz p=0.688243

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-153, - strand, RNAz p=0.688243

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               90-165, + strand, RNAmicro p=0.968962

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               90-165, + strand, RNAmicro p=0.968962

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-535, gnl|bosTau2|chr4 (56228948-56229471)
               

               
               1-535, gnl|Hg17|chr7 (134890874-134890356)
               

               
               1-535, gnl|Mm7|chr6 (35257402-35256880)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-535, gnl|bosTau2|chr4 (56228948-56229471)
               

               
               1-535, gnl|Hg17|chr7 (134890874-134890356)
               

               
               1-535, gnl|Mm7|chr6 (35257402-35256880)

	1-535, gnl\|bosTau2\|chr4 (56228948-56229471)
	1-535, gnl\|Hg17\|chr7 (134890874-134890356)
	1-535, gnl\|Mm7\|chr6 (35257402-35256880)