Non-Coding RNA Search

Ss1.1-Spl1-SPL01F080070.5

Sequence:


               
               ATTGCACATGCTGCGGACGCAGTCGGCTGCCGTTGGCCCCGTCACAAGAGCTCTTCAGTC
AGAACGGCCCGGGGTCGCCTGTGGAGCCCTGTGTCTCCCTGGGGAGAGCACCTGCCACTT
GGGGAAACGTGGACATGAGGTGAGAGCATGGATGTGGCACAGCCACGCTAGAAGCCACCC
ATCTACAGGCCTTGTTGGGTAACTGACCTCAGGCTTCGGGAACCTTGGAGATGCCTCGTT
TCTTTCTTGCATCCTTTATTCAACAGTATTTATCCAGCCACCAGGCAAGACACTGGCCTG
GTGCCTTCTTGCCACATAGAAGAAGATAGTCCATTTTCTTGAGGGGAAAAGCAGGTAATT
ACAGTTCAGTAACCGTGACAGAGGTAAACCCAGGACTAAAGGCCTAGAGAAAAACCCCTT
GGAAGAAGGGACTTAGTCTGAGAACGCAAGGACTAACAAGTGTTAGCAAAGCCAAGGAGA
GGGGCACAGCTATGCCAAGGCCCAGCAGGGAGAAAGCATTTGACTTGGGGGCACCTGGAA
GACGTTGAAGACAGCCCAAGTGTTGGGTACAAGCAGTGAAGAGATAAGGCCGAAAAGGTA
AGCAGGGGCCAATCATGGCCCATTAACATTTTAATAGCTTCCTGTACAATAAACAAGTCT
TGGTTTAGCGTTATTGAAAACAGGCTTTCTTTAATTAACAAAATCAGGCAAGAAAAGTGA
CTGCAGAGATCAAATCCCCATGGCTGGCAATACCATAACTGACACCTGGGGACGCCGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCACATGCTGCGGACGCAGTCGGCTGCCGTTGGCCCCGTCACAAGAGCTCTTCAGTC
AGAACGGCCCGGGGTCGCCTGTGGAGCCCTGTGTCTCCCTGGGGAGAGCACCTGCCACTT
GGGGAAACGTGGACATGAGGTGAGAGCATGGATGTGGCACAGCCACGCTAGAAGCCACCC
ATCTACAGGCCTTGTTGGGTAACTGACCTCAGGCTTCGGGAACCTTGGAGATGCCTCGTT
TCTTTCTTGCATCCTTTATTCAACAGTATTTATCCAGCCACCAGGCAAGACACTGGCCTG
GTGCCTTCTTGCCACATAGAAGAAGATAGTCCATTTTCTTGAGGGGAAAAGCAGGTAATT
ACAGTTCAGTAACCGTGACAGAGGTAAACCCAGGACTAAAGGCCTAGAGAAAAACCCCTT
GGAAGAAGGGACTTAGTCTGAGAACGCAAGGACTAACAAGTGTTAGCAAAGCCAAGGAGA
GGGGCACAGCTATGCCAAGGCCCAGCAGGGAGAAAGCATTTGACTTGGGGGCACCTGGAA
GACGTTGAAGACAGCCCAAGTGTTGGGTACAAGCAGTGAAGAGATAAGGCCGAAAAGGTA
AGCAGGGGCCAATCATGGCCCATTAACATTTTAATAGCTTCCTGTACAATAAACAAGTCT
TGGTTTAGCGTTATTGAAAACAGGCTTTCTTTAATTAACAAAATCAGGCAAGAAAAGTGA
CTGCAGAGATCAAATCCCCATGGCTGGCAATACCATAACTGACACCTGGGGACGCCGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               603-717, - strand, RNAz p=0.535849

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               603-717, - strand, RNAz p=0.535849

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               24-206, gnl|bosTau2|chr3 (57005721-57005538)
               

               
               24-206, gnl|Hg17|chr1 (61626815-61627002)
               

               
               24-206, gnl|Mm7|chr4 (97496983-97497181)
               


               
               247-770, gnl|bosTau2|chr3 (57005288-57004779)
               

               
               247-770, gnl|Hg17|chr1 (61627046-61627547)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-206, gnl|bosTau2|chr3 (57005721-57005538)
               

               
               24-206, gnl|Hg17|chr1 (61626815-61627002)
               

               
               24-206, gnl|Mm7|chr4 (97496983-97497181)
               


               
               247-770, gnl|bosTau2|chr3 (57005288-57004779)
               

               
               247-770, gnl|Hg17|chr1 (61627046-61627547)

	24-206, gnl\|bosTau2\|chr3 (57005721-57005538)
	24-206, gnl\|Hg17\|chr1 (61626815-61627002)
	24-206, gnl\|Mm7\|chr4 (97496983-97497181)

	247-770, gnl\|bosTau2\|chr3 (57005288-57004779)
	247-770, gnl\|Hg17\|chr1 (61627046-61627547)