Ss1.1-Spl1-SPL01F100058.5
|
GACAGGTCTCAGTATGCTTATTATAAGTGCTTTAAA------------------------
------------------------------------------------------------
------------------------------------------------AAAAAACAAAAA
CAAAAAAACCTCTAGGAAATGGGATATGTACATTCAAATCATTGGAGTAAAGAGAATGAG
CAAAGAAAACAGTCTTTGGGGCAAAAAGAAAAAAAGTCAAGGAAACTGATAAGAAGCATT
TAAATGGAAAGCATAAAACAAGCTTACAAAGGCAACCCCTGTCCTTTTCAATGTATGTAA
GTGAAAGCTTCCATATTAAAAGTTGAAGCCTGTAAAGATCAAGTGGAAAAAAAAAAACTA
CTATACGTGTATTGAGAAAAATACTTAAATTACTCCCAAAGGTGAAAAATGTAAAGGTGG
TCAGAGACGTGAAATAAAAGACAAAGTGGCAACATTGTAAATCAACTATAATAAAAAAAT
TCTTGGAGTTCCCGTCTTGGCTCAGCAGTTAATGAACCCAACTAGCATTCCATGAGGACA
TGGGTTTGATCCCTGGTCTTGCTTAGTGGGTTAAGGATCCAGCATTGCCAAGAGCTGTGG
TTTAGGTCACAGACACAGCTCAGATCCCGTGTTGCTGTGTCTGTGGCACAGGCTGGTGTC
TTCAGCTCTGAT------------------------------------------------
------------AAAAAAAAAAAATTTTTTTTTTTAATGAGGGAGGCAGAGGCACTACAA
GTGAACTTTATGTTTAAGAAACATCAGATGTGTTATTACAAACAGATCATCAATAGCAAC
TAAACCAGGCTACACAGCTGAACTGAGAGGCAAATGCATTCATTCAACAAATATTTGAGC
ACCTGCTCTAGGGAGTTGAAACACATTGCTGAACAAAACAGACAAAAACCCCATGTTCTT
AAATCTTAATCAGAAGTCTTTTGCAAGTCTCATCTTCAGAAAAAGGAACAAAATGCTAGT
TATAAAAATTAGGAGTAAGAACGTGCTATAAAAATAGAATGAACTTCTTTAAATAGAAAG
AGAATTATGAACAGGTATTTGCAGCAAGACATTGAGAATTCTCACTGTCCATACTTAGGT
GCTTAATCTATTTGAATAACAGGGTATAACTATATACTGAATTTATAAATTTTAAGTCTT
AATGACTCAGATCAAGGAAGGAAGTTGGAAAGTTGCCATAATATTACCTACAAAAGAGAA
TTCCAGACCTCATGGTGTTATGAATAAAATTCTTTGGAATGGTTAAGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACAGGTCTCAGTATGCTTATTATAAGTGCTTTAAA------------------------
------------------------------------------------------------
------------------------------------------------AAAAAACAAAAA
CAAAAAAACCTCTAGGAAATGGGATATGTACATTCAAATCATTGGAGTAAAGAGAATGAG
CAAAGAAAACAGTCTTTGGGGCAAAAAGAAAAAAAGTCAAGGAAACTGATAAGAAGCATT
TAAATGGAAAGCATAAAACAAGCTTACAAAGGCAACCCCTGTCCTTTTCAATGTATGTAA
GTGAAAGCTTCCATATTAAAAGTTGAAGCCTGTAAAGATCAAGTGGAAAAAAAAAAACTA
CTATACGTGTATTGAGAAAAATACTTAAATTACTCCCAAAGGTGAAAAATGTAAAGGTGG
TCAGAGACGTGAAATAAAAGACAAAGTGGCAACATTGTAAATCAACTATAATAAAAAAAT
TCTTGGAGTTCCCGTCTTGGCTCAGCAGTTAATGAACCCAACTAGCATTCCATGAGGACA
TGGGTTTGATCCCTGGTCTTGCTTAGTGGGTTAAGGATCCAGCATTGCCAAGAGCTGTGG
TTTAGGTCACAGACACAGCTCAGATCCCGTGTTGCTGTGTCTGTGGCACAGGCTGGTGTC
TTCAGCTCTGAT------------------------------------------------
------------AAAAAAAAAAAATTTTTTTTTTTAATGAGGGAGGCAGAGGCACTACAA
GTGAACTTTATGTTTAAGAAACATCAGATGTGTTATTACAAACAGATCATCAATAGCAAC
TAAACCAGGCTACACAGCTGAACTGAGAGGCAAATGCATTCATTCAACAAATATTTGAGC
ACCTGCTCTAGGGAGTTGAAACACATTGCTGAACAAAACAGACAAAAACCCCATGTTCTT
AAATCTTAATCAGAAGTCTTTTGCAAGTCTCATCTTCAGAAAAAGGAACAAAATGCTAGT
TATAAAAATTAGGAGTAAGAACGTGCTATAAAAATAGAATGAACTTCTTTAAATAGAAAG
AGAATTATGAACAGGTATTTGCAGCAAGACATTGAGAATTCTCACTGTCCATACTTAGGT
GCTTAATCTATTTGAATAACAGGGTATAACTATATACTGAATTTATAAATTTTAAGTCTT
AATGACTCAGATCAAGGAAGGAAGTTGGAAAGTTGCCATAATATTACCTACAAAAGAGAA
TTCCAGACCTCATGGTGTTATGAATAAAATTCTTTGGAATGGTTAAGA
|
|
56-373, gnl|bosTau2|chr19 (42976926-42976615) |
|
56-373, gnl|Hg17|chr17 (63358818-63359425) |
| |
|
686-845, gnl|bosTau2|chr19 (42975825-42975667) |
|
686-845, gnl|canFam2|chr9 (15755202-15755006) |
|
686-845, gnl|dasNov1|scaffold_7045 (37456-37768) |
|
686-845, gnl|hg17|chr17 (63361525-63361721) |
|
686-845, gnl|Hg17|chr17 (63361524-63361682) |
|
686-845, gnl|loxAfr1|scaffold_39998 (11379-11583) |
|
686-845, gnl|panTro1|chr19 (66642041-66642237) |
|
686-845, gnl|rheMac2|chr16 (63286092-63286285) |
| |
|
1055-1172, gnl|bosTau2|chr19 (42975293-42975175) |
|
1055-1172, gnl|canFam2|chr9 (15754128-15753564) |
|
1055-1172, gnl|dasNov1|scaffold_7045 (37836-38423) |
|
1055-1172, gnl|hg17|chr17 (63362423-63362979) |
|
1055-1172, gnl|Hg17|chr17 (63362550-63362666) |
|
1055-1172, gnl|loxAfr1|scaffold_39998 (11754-12306) |
|
1055-1172, gnl|panTro1|chr19 (66642939-66643494) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
56-373, gnl|bosTau2|chr19 (42976926-42976615) |
|
56-373, gnl|Hg17|chr17 (63358818-63359425) |
| |
|
686-845, gnl|bosTau2|chr19 (42975825-42975667) |
|
686-845, gnl|canFam2|chr9 (15755202-15755006) |
|
686-845, gnl|dasNov1|scaffold_7045 (37456-37768) |
|
686-845, gnl|hg17|chr17 (63361525-63361721) |
|
686-845, gnl|Hg17|chr17 (63361524-63361682) |
|
686-845, gnl|loxAfr1|scaffold_39998 (11379-11583) |
|
686-845, gnl|panTro1|chr19 (66642041-66642237) |
|
686-845, gnl|rheMac2|chr16 (63286092-63286285) |
| |
|
1055-1172, gnl|bosTau2|chr19 (42975293-42975175) |
|
1055-1172, gnl|canFam2|chr9 (15754128-15753564) |
|
1055-1172, gnl|dasNov1|scaffold_7045 (37836-38423) |
|
1055-1172, gnl|hg17|chr17 (63362423-63362979) |
|
1055-1172, gnl|Hg17|chr17 (63362550-63362666) |
|
1055-1172, gnl|loxAfr1|scaffold_39998 (11754-12306) |
|
1055-1172, gnl|panTro1|chr19 (66642939-66643494) |
