Non-Coding RNA Search

Ss1.1-Spl1-SPL01F110105.5

Sequence:


               
               AATGGCTACAAACTGCAGTTTGGTTTAAAGTTTCCTCATTAATGCAAGAGAATGCCCACA
ACCTGAGGCTTTTCAAGTGTTTATTAATTTGCTTTCTGGGACTGAGTGCCAATATTTATT
CAGATCAAAGACAAAGCCGATGTCTTTAGCACTTACTGTGTGTCGGGAACTATGCCAAGT
CTTGTGCCTAGGTGACCTCATTGATAATCATCAAAACCAGCAGATGGCCTTTCCTCATTT
GACCAGTGGAGTGACTGGGGCTCACTGGGGTTAAATACTCACCTATGGACCCACCAGGCA
TGAGTAATAGAATTGAGGTTTGAAGTGACATCTACCTGATTCCAGGAACCTGGGCTGTTT
CCGCTGCACCATGCAGTCATCCTGTCCTCAGCTTCAGAGTGGTTTTTTATAGCCTCTCTA
AGCAGAATCTAATATTTCGTGGGCTCTCAATCTATTTTAAGCCATAAGCTTTGCTTTTTC
ACACTAAGAACTTATGGCTTAGGATATGTCTCACATAGACCTTAGGCTTTAGTAAGACCC
TCTCTCCAGCCTGTTCGTGTGCTCGCTCTGCCTCCAAGCCCCACTTTGATGATCATATGA
TTCTACCCAGAGGTATTTCTTTAAAACCATCCTGCTTTGCATACCCTCTACCAGTGCCAT
CTAATACCTGGGCTTCACTTGTTCCCATCTTAGCATTTATTTTTATATCACCTGCAATAA
TCCTGAAGCTCTTGCTTAGGCACAGTGACAGGGTGAGGCAGCAAGAGGGGGTTATAATGG
CTTCCTTCCTACAGTTCCCATCCGTTCATGTCCATATGATCAGCTCATAAACACACAGCA
CCCTTGTGACTTCTTTCCTCATCGAGGCTGCCCTTGATAGCACAACCTTTGACTGCCTAG
ATTTTTGCAGCCATCAAATCAGAACTAAAAGGAAACTGAGTTCATTTACCTAGCCCTTAA
CTGTACCAGGGAGAGAAGCAACTAAAGCCCAGAGAGGAATGCCAGCTTATCCAGGCACAC
ACAGCTTGTCAGCAGCAGATCCTGGACTAGAAAGACCCCGGGGCTTCCAGCCTCAGTCTG
GAGCTCACTCTGTAGCAGCTCACTGCCTCCCGCCTGCCTCAGTTGATGAAGCAGGGGCCG
TCCCCCTGCATGGGAAGCACTTACCTTGGAGCCCTTTTCATGAATGAGACCAGATGCAGA
ACTGCACATTGATCATTTCTGACCCTCCCCTTTCTGCTTTCTGTTAAAGGCAGCCCCCCA
GCTCCCAGCTGGCTCCTGTCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGCTACAAACTGCAGTTTGGTTTAAAGTTTCCTCATTAATGCAAGAGAATGCCCACA
ACCTGAGGCTTTTCAAGTGTTTATTAATTTGCTTTCTGGGACTGAGTGCCAATATTTATT
CAGATCAAAGACAAAGCCGATGTCTTTAGCACTTACTGTGTGTCGGGAACTATGCCAAGT
CTTGTGCCTAGGTGACCTCATTGATAATCATCAAAACCAGCAGATGGCCTTTCCTCATTT
GACCAGTGGAGTGACTGGGGCTCACTGGGGTTAAATACTCACCTATGGACCCACCAGGCA
TGAGTAATAGAATTGAGGTTTGAAGTGACATCTACCTGATTCCAGGAACCTGGGCTGTTT
CCGCTGCACCATGCAGTCATCCTGTCCTCAGCTTCAGAGTGGTTTTTTATAGCCTCTCTA
AGCAGAATCTAATATTTCGTGGGCTCTCAATCTATTTTAAGCCATAAGCTTTGCTTTTTC
ACACTAAGAACTTATGGCTTAGGATATGTCTCACATAGACCTTAGGCTTTAGTAAGACCC
TCTCTCCAGCCTGTTCGTGTGCTCGCTCTGCCTCCAAGCCCCACTTTGATGATCATATGA
TTCTACCCAGAGGTATTTCTTTAAAACCATCCTGCTTTGCATACCCTCTACCAGTGCCAT
CTAATACCTGGGCTTCACTTGTTCCCATCTTAGCATTTATTTTTATATCACCTGCAATAA
TCCTGAAGCTCTTGCTTAGGCACAGTGACAGGGTGAGGCAGCAAGAGGGGGTTATAATGG
CTTCCTTCCTACAGTTCCCATCCGTTCATGTCCATATGATCAGCTCATAAACACACAGCA
CCCTTGTGACTTCTTTCCTCATCGAGGCTGCCCTTGATAGCACAACCTTTGACTGCCTAG
ATTTTTGCAGCCATCAAATCAGAACTAAAAGGAAACTGAGTTCATTTACCTAGCCCTTAA
CTGTACCAGGGAGAGAAGCAACTAAAGCCCAGAGAGGAATGCCAGCTTATCCAGGCACAC
ACAGCTTGTCAGCAGCAGATCCTGGACTAGAAAGACCCCGGGGCTTCCAGCCTCAGTCTG
GAGCTCACTCTGTAGCAGCTCACTGCCTCCCGCCTGCCTCAGTTGATGAAGCAGGGGCCG
TCCCCCTGCATGGGAAGCACTTACCTTGGAGCCCTTTTCATGAATGAGACCAGATGCAGA
ACTGCACATTGATCATTTCTGACCCTCCCCTTTCTGCTTTCTGTTAAAGGCAGCCCCCCA
GCTCCCAGCTGGCTCCTGTCCCCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               183-299, - strand, RNAz p=0.873037
               

               
               339-433, - strand, RNAz p=0.575908
               

               
               412-531, + strand, RNAz p=0.97515

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-299, - strand, RNAz p=0.873037
               

               
               339-433, - strand, RNAz p=0.575908
               

               
               412-531, + strand, RNAz p=0.97515

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-531, gnl|bosTau2|chr10 (11522690-11523218)
               

               
               1-531, gnl|canFam2|chr30 (38153974-38154508)
               

               
               1-531, gnl|dasNov1|scaffold_7600 (72741-72217)
               

               
               1-531, gnl|echTel1|scaffold_296218 (6093-6755)
               

               
               1-531, gnl|hg17|chr15 (69625222-69625789)
               

               
               1-531, gnl|Hg17|chr15 (69625281-69625761)
               

               
               1-531, gnl|loxAfr1|scaffold_3347 (62091-62658)
               

               
               1-531, gnl|mm7|chr9 (60169432-60168912)
               

               
               1-531, gnl|panTro1|chr16 (70258914-70259482)
               

               
               1-531, gnl|rheMac2|chr7 (50196191-50196756)
               

               
               1-531, gnl|rn3|chr8 (64052653-64052130)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-531, gnl|bosTau2|chr10 (11522690-11523218)
               

               
               1-531, gnl|canFam2|chr30 (38153974-38154508)
               

               
               1-531, gnl|dasNov1|scaffold_7600 (72741-72217)
               

               
               1-531, gnl|echTel1|scaffold_296218 (6093-6755)
               

               
               1-531, gnl|hg17|chr15 (69625222-69625789)
               

               
               1-531, gnl|Hg17|chr15 (69625281-69625761)
               

               
               1-531, gnl|loxAfr1|scaffold_3347 (62091-62658)
               

               
               1-531, gnl|mm7|chr9 (60169432-60168912)
               

               
               1-531, gnl|panTro1|chr16 (70258914-70259482)
               

               
               1-531, gnl|rheMac2|chr7 (50196191-50196756)
               

               
               1-531, gnl|rn3|chr8 (64052653-64052130)

	183-299, - strand, RNAz p=0.873037
	339-433, - strand, RNAz p=0.575908
	412-531, + strand, RNAz p=0.97515

	1-531, gnl\|bosTau2\|chr10 (11522690-11523218)
	1-531, gnl\|canFam2\|chr30 (38153974-38154508)
	1-531, gnl\|dasNov1\|scaffold_7600 (72741-72217)
	1-531, gnl\|echTel1\|scaffold_296218 (6093-6755)
	1-531, gnl\|hg17\|chr15 (69625222-69625789)
	1-531, gnl\|Hg17\|chr15 (69625281-69625761)
	1-531, gnl\|loxAfr1\|scaffold_3347 (62091-62658)
	1-531, gnl\|mm7\|chr9 (60169432-60168912)
	1-531, gnl\|panTro1\|chr16 (70258914-70259482)
	1-531, gnl\|rheMac2\|chr7 (50196191-50196756)
	1-531, gnl\|rn3\|chr8 (64052653-64052130)