Non-Coding RNA Search

Ss1.1-Spl1-SPL01G010101.5

Sequence:


               
               AATTTCCATTCCTTCAGCCATATACCTCTCTGGATTTGCTGCCTACCTAGCTTTAGGTAC
ACTACCTTTCTCTGTTGGAGCAAGAGGCAGTTGGACCAGAACGGCATTAAAGCCTAAACA
TAGGCAGTAAAGGTAACCTGTTAAAGATGCCATGATGAGGGAGTTCCCATCGTGGCGCAG
TGGTTAACAAATCCGACTAGGAACCATGAGGTTGTGGGTTTGATCCCTGACCTTGCTCAG
TGGGTTAAGGATCCGGCATTGCCGTGGGCTGTGGTGCAGGCCGCAGATGCAGCTCGGATC
TGGCGTGGCTGTGGCTGTGGTGTAGCTGAAGCTCTGATTAGACCCCTAGCTTGGGAGCCT
CCATATGCCACAGGAGCGGCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTCCATTCCTTCAGCCATATACCTCTCTGGATTTGCTGCCTACCTAGCTTTAGGTAC
ACTACCTTTCTCTGTTGGAGCAAGAGGCAGTTGGACCAGAACGGCATTAAAGCCTAAACA
TAGGCAGTAAAGGTAACCTGTTAAAGATGCCATGATGAGGGAGTTCCCATCGTGGCGCAG
TGGTTAACAAATCCGACTAGGAACCATGAGGTTGTGGGTTTGATCCCTGACCTTGCTCAG
TGGGTTAAGGATCCGGCATTGCCGTGGGCTGTGGTGCAGGCCGCAGATGCAGCTCGGATC
TGGCGTGGCTGTGGCTGTGGTGTAGCTGAAGCTCTGATTAGACCCCTAGCTTGGGAGCCT
CCATATGCCACAGGAGCGGCCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               31-140, + strand, RNAz p=0.541642

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               31-140, + strand, RNAz p=0.541642

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC000988, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC000988, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-159, gnl|bosTau2|chr16 (154144-154300)
               

               
               1-159, gnl|Hg17|chr1 (200431456-200431618)
               

               
               1-159, gnl|Mm7|chr1 (133603423-133603255)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr16 (154144-154300)
               

               
               1-159, gnl|Hg17|chr1 (200431456-200431618)
               

               
               1-159, gnl|Mm7|chr1 (133603423-133603255)

	1-159, gnl\|bosTau2\|chr16 (154144-154300)
	1-159, gnl\|Hg17\|chr1 (200431456-200431618)
	1-159, gnl\|Mm7\|chr1 (133603423-133603255)