Ss1.1-Spl1-SPL01G050056.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCTCCCCAGAAGCCACCCCAGAGGCCTCTCCTCCGGCCTCAAGAGGTCTGCTTGTCTT CTCATCCCCGGGAGGAGAGTGAGGCCATGGGGCTGCCCCTGCTGCTGCTGCTGCTGCTGT TGCTGCTGCTGCTGCCACCGGCATCTCTGCAGGGTGATCACTGGGCAGAACTCAAAGCAC GCTTTCACTCTGGGATGAACCAGCAAAAACAACTCTCAGCCCCTGAGGGTGGCTCCATCC GCATCCCCTTCTTCTTCTACTACTCCCAGGACTCAGGCAGGGTTTCCAATGTGAAAATAT CCTGGAGATGGAAACACTTCCATGGGGATTTCATCTACAAAACGACCCCCCCGACTCATC CATAAGAACTTCGAGAACCGGCTCCTCCTGAACTGGGAAGAGGGTATGAAGAAAGGCTCC CTCCAGATCTCGAACCTGCGGAGGGAGGACGAGGGTTTGTATTTCTGCCAAGTGGAGATG ATCACAGAGAAATACGGTGAACAGAGGTGGCAGTCCATCCAGGGGACCGAGCTCACGATC ACACACGCTGCCAAGACGGCCACCCCGGGCCCCACCACTTCTGCCAGCACCGCGGCCACC ACTGCAGCTGATCTCTGGGACCTGGAGGGGAAAAGGAGTTCAGGGTCTTGGCTCCTGAAT AAGGAAGCAGTGGTCAGGTTGGCCCTGCCCAGCGCTGTGCTCAAGATCGCAATTTTGGGA CTGATGGTCTTCCTCANGTGGAAGAGAAGCAAAGGTCTGCAGACTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCTCCCCAGAAGCCACCCCAGAGGCCTCTCCTCCGGCCTCAAGAGGTCTGCTTGTCTT CTCATCCCCGGGAGGAGAGTGAGGCCATGGGGCTGCCCCTGCTGCTGCTGCTGCTGCTGT TGCTGCTGCTGCTGCCACCGGCATCTCTGCAGGGTGATCACTGGGCAGAACTCAAAGCAC GCTTTCACTCTGGGATGAACCAGCAAAAACAACTCTCAGCCCCTGAGGGTGGCTCCATCC GCATCCCCTTCTTCTTCTACTACTCCCAGGACTCAGGCAGGGTTTCCAATGTGAAAATAT CCTGGAGATGGAAACACTTCCATGGGGATTTCATCTACAAAACGACCCCCCCGACTCATC CATAAGAACTTCGAGAACCGGCTCCTCCTGAACTGGGAAGAGGGTATGAAGAAAGGCTCC CTCCAGATCTCGAACCTGCGGAGGGAGGACGAGGGTTTGTATTTCTGCCAAGTGGAGATG ATCACAGAGAAATACGGTGAACAGAGGTGGCAGTCCATCCAGGGGACCGAGCTCACGATC ACACACGCTGCCAAGACGGCCACCCCGGGCCCCACCACTTCTGCCAGCACCGCGGCCACC ACTGCAGCTGATCTCTGGGACCTGGAGGGGAAAAGGAGTTCAGGGTCTTGGCTCCTGAAT AAGGAAGCAGTGGTCAGGTTGGCCCTGCCCAGCGCTGTGCTCAAGATCGCAATTTTGGGA CTGATGGTCTTCCTCANGTGGAAGAGAAGCAAAGGTCTGCAGACTAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 198-355, - strand, RNAz p=0.936546 | |
| 213-328, - strand, RNAz p=0.92297 | |
| 235-354, + strand, RNAz p=0.968975 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 198-355, - strand, RNAz p=0.936546 | |
| 213-328, - strand, RNAz p=0.92297 | |
| 235-354, + strand, RNAz p=0.968975 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 158-542, gnl|bosTau2|chr25 (32562590-32562207) | |
| 158-542, gnl|canFam2|chr6 (12295820-12294894) | |
| 158-542, gnl|canFam2|chr6 (12295420-12294894) | |
| 158-542, gnl|dasNov1|scaffold_23444 (22266-21399) | |
| 158-542, gnl|dasNov1|scaffold_23444 (21873-21399) | |
| 158-542, gnl|hg17|chr7 (99600361-99601303) | |
| 158-542, gnl|hg17|chr7 (99616118-99616657) | |
| 158-542, gnl|Hg17|chr7 (99616319-99616702) | |
| 158-542, gnl|mm7|chr5 (136776146-136775210) | |
| 158-542, gnl|mm7|chr5 (136753902-136753385) | |
| 158-542, gnl|Mm7|chr5 (136753722-136753338) | |
| 158-542, gnl|oryCun1|scaffold_119790 (7864-7341) | |
| 158-542, gnl|oryCun1|scaffold_177702 (47693-48615) | |
| 158-542, gnl|panTro1|chr6 (101383056-101384019) | |
| 158-542, gnl|panTro1|chr6 (101399846-101400385) | |
| 158-542, gnl|rheMac2|chr3 (47545032-47545981) | |
| 158-542, gnl|rheMac2|chr3 (47545453-47545981) | |
| 158-542, gnl|rn3|chr12 (19984501-19985417) | |
| 158-542, gnl|rn3|chr12 (19885515-19885015) | |
| 552-756, gnl|bosTau2|chr6 (8999559-8999765) | |
| 552-756, gnl|Hg17|chr7 (99632166-99632382) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-542, gnl|bosTau2|chr25 (32562590-32562207) | |
| 158-542, gnl|canFam2|chr6 (12295820-12294894) | |
| 158-542, gnl|canFam2|chr6 (12295420-12294894) | |
| 158-542, gnl|dasNov1|scaffold_23444 (22266-21399) | |
| 158-542, gnl|dasNov1|scaffold_23444 (21873-21399) | |
| 158-542, gnl|hg17|chr7 (99600361-99601303) | |
| 158-542, gnl|hg17|chr7 (99616118-99616657) | |
| 158-542, gnl|Hg17|chr7 (99616319-99616702) | |
| 158-542, gnl|mm7|chr5 (136776146-136775210) | |
| 158-542, gnl|mm7|chr5 (136753902-136753385) | |
| 158-542, gnl|Mm7|chr5 (136753722-136753338) | |
| 158-542, gnl|oryCun1|scaffold_119790 (7864-7341) | |
| 158-542, gnl|oryCun1|scaffold_177702 (47693-48615) | |
| 158-542, gnl|panTro1|chr6 (101383056-101384019) | |
| 158-542, gnl|panTro1|chr6 (101399846-101400385) | |
| 158-542, gnl|rheMac2|chr3 (47545032-47545981) | |
| 158-542, gnl|rheMac2|chr3 (47545453-47545981) | |
| 158-542, gnl|rn3|chr12 (19984501-19985417) | |
| 158-542, gnl|rn3|chr12 (19885515-19885015) | |
| 552-756, gnl|bosTau2|chr6 (8999559-8999765) | |
| 552-756, gnl|Hg17|chr7 (99632166-99632382) |