Non-Coding RNA Search

Ss1.1-Spl1-SPL01G080088.5

Sequence:


               
               GGCTGGGACCTGGAATCTGAATATTTAACAAGTTGCCCAAGCGTTTTTTGTGAAAGCTAA
AAGCTGGTATGCCCCATTGCTGGAAAGGATAGATGAGAATGCAGAGGGATCCGGACTCAG
GAATTCTGAACCCCCATCCTTCCCCCCTTTCGCCCCCCCAACCCCCGCCCCTGGTAAAGG
ACTTGAAGCAACTGGTCAGTAGACCTCTGCGAAAAATCATTCAGCGGCCAAGGCCTTGGG
GCGGAGACCCCGGGGCTGCCCTCACGGGGCGGGGCTCGACGGGGCGGGGTCGCGGCTCCT
CCCCCAACCAGGGCGGCGGGGCTGGACCGGCCCGAGGGGCTGCGCGCCGAGGCGGTGGTA
CAGCCTGGAGCACCCAGCTGCTGCGGGCGGCCGGGGACCCTGGACCCCTCCTCACACTGA
GGTAAAGGCCCGTGAATCCTGCCACCAACTTAGTTAAGTTGGAGCGGAGTTCGCCAGGCG
CCTGTATGGGGGGGTGGGGGTGGGGGCCGGGAGGTTCTGTGGCGCAGTCAGGGGTTGAGG
GGGGCTCAAACCCACACCCTGAAATGAGGATCCCTGGATCTGGACCCCGGAGAGTGAGGC
AGTCTGGGACAAGTAACCCTGCAAGGATCGGGGGACTCACACCCAGGACCGCAGGCTGGG
GAAGCTCGTACTCACACTCCGGGAATGACATGCCCGCCTGGGCCGGGTAGGTCCCCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGGACCTGGAATCTGAATATTTAACAAGTTGCCCAAGCGTTTTTTGTGAAAGCTAA
AAGCTGGTATGCCCCATTGCTGGAAAGGATAGATGAGAATGCAGAGGGATCCGGACTCAG
GAATTCTGAACCCCCATCCTTCCCCCCTTTCGCCCCCCCAACCCCCGCCCCTGGTAAAGG
ACTTGAAGCAACTGGTCAGTAGACCTCTGCGAAAAATCATTCAGCGGCCAAGGCCTTGGG
GCGGAGACCCCGGGGCTGCCCTCACGGGGCGGGGCTCGACGGGGCGGGGTCGCGGCTCCT
CCCCCAACCAGGGCGGCGGGGCTGGACCGGCCCGAGGGGCTGCGCGCCGAGGCGGTGGTA
CAGCCTGGAGCACCCAGCTGCTGCGGGCGGCCGGGGACCCTGGACCCCTCCTCACACTGA
GGTAAAGGCCCGTGAATCCTGCCACCAACTTAGTTAAGTTGGAGCGGAGTTCGCCAGGCG
CCTGTATGGGGGGGTGGGGGTGGGGGCCGGGAGGTTCTGTGGCGCAGTCAGGGGTTGAGG
GGGGCTCAAACCCACACCCTGAAATGAGGATCCCTGGATCTGGACCCCGGAGAGTGAGGC
AGTCTGGGACAAGTAACCCTGCAAGGATCGGGGGACTCACACCCAGGACCGCAGGCTGGG
GAAGCTCGTACTCACACTCCGGGAATGACATGCCCGCCTGGGCCGGGTAGGTCCCCTCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               59-288, - strand, RNAz p=0.912445
               

               
               404-720, - strand, RNAz p=0.996068

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-288, - strand, RNAz p=0.912445
               

               
               404-720, - strand, RNAz p=0.996068

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               567-704, - strand, RNAmicro p=0.999719
               

               
               64-220, - strand, RNAmicro p=0.997659
               

               
               594-712, + strand, RNAmicro p=0.908255

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               567-704, - strand, RNAmicro p=0.999719
               

               
               64-220, - strand, RNAmicro p=0.997659
               

               
               594-712, + strand, RNAmicro p=0.908255

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               59-720, gnl|bosTau2|chr13 (43206936-43207579)
               

               
               59-720, gnl|Hg17|chr20 (29526464-29527107)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-720, gnl|bosTau2|chr13 (43206936-43207579)
               

               
               59-720, gnl|Hg17|chr20 (29526464-29527107)

	59-288, - strand, RNAz p=0.912445
	404-720, - strand, RNAz p=0.996068

	567-704, - strand, RNAmicro p=0.999719
	64-220, - strand, RNAmicro p=0.997659
	594-712, + strand, RNAmicro p=0.908255

	59-720, gnl\|bosTau2\|chr13 (43206936-43207579)
	59-720, gnl\|Hg17\|chr20 (29526464-29527107)