Ss1.1-Spl1-SPL01H030105.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGAACTGGACACCGGGGATGCCAAGTTCTTCCAGGTCATCGAACAGCTCAACTCTCAG AAACAGTGGAAACAGTCAAAGGACTTCAACCCACTGACACTGTACTTCAGAGAAAAGGAG ATGGAGAAAGAGTATCGGCTCTCCGCACTCCCCGCCTTCAAATACTATGCAGCCTGCACC TTCCTGGTTTTTCTCTCCAACTTCATCATCCAGATGCTGGTGACAAACAGGCCTCCAGCT CTGGCCATCACCTATGGCATCGCCTTCCTCCTCTTCTTCCTCCTCCTCTTCATCTGCTTC TCAGAGTACCTGACGAAGTGTGTCTTGAAAGGCCCCAAGATGCTACACTGGCTGCCCACA CTGTCTGTCCTGGTGGCCACACGGCCTGGACTGCGAGTTGCCCTGGGTACTGCCACCATC CTGCTCATCTTTGCCATGGCCATTGCCAGCCTGGTCTTCCTACCGGTGGCATCACACTGC CCTTTCCAGGCTCCCAATGTGTCCTCCATGGCTTTCAACCTCTCCTGGGAGCTCCCTGGA TCCCTGCCTCTCATCAGTGTCCCTTACTCCATGCACTGCTGCATGCTGGGCTTCCTCTCC TGCTCCCTCTTCCTACACATGAGCTTCGAGCTGAAGCTGCTGCTGCTCCTGCTGTGGCTG GCGGCCTCCTGCTCCCTCTTCCTGCACTCCCACGCCTGGCTGTCCGACTGCCTCGTCGCC CGCCTCTACCAGGGCACCTTGGACTCCAGGCCAGGGGTGCTGAAGGATCCCAAGTTGATG GGAGCAGTCTCCTTCTTTGTCTTCTTCTTCACCCTCCTGGTCCTGGCTCGGCAGAATGAG TATTACTGCCGCCTGGACTTCCTGTGGAAGAAGAAGCTGAGGCAGGAGCGGGAGGAGACA GAGACAATGGAGAACCTGACTCGCTTGCTCTTGGAGAACGTGCTCCCCGCGCACGTGGCC CCCCAGTTCATTGGCCAGAATCGGCGCAACGAGGACCTCTACCACCAGTCCTACGAGTGT GTCTGTGTCCTCTTCGCCTCAGTCCCAGACTTTAAGGAGTTTTACTCTGAATCCAACATC AACCATGAGGGGCTAGAGTGTCTGCGGCTGCTCAATGAGATCATTGCTGATTTTGATGAG CTACTCTCCAAGCCCAAGTTCAGTGGGGTGGAGAAGATCAAAACCATCGGCAGCACCTAC ATGGCAGCTACAGGCTTGAATGCCACCTCTGGACAGGACACCCAGCAGGATGCTGAGCGA AGTTGCAGCCACCTTGGCACCATGGTGGAATTTGCCGTGGCCCTTGGGTCTAAGCTGGAC GTCATCAACAAGCACTCATTCAACAACTTCCGCTTGCGTGTGGGGTTAAACCATGGACCT GTAGTGGCCGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGAACTGGACACCGGGGATGCCAAGTTCTTCCAGGTCATCGAACAGCTCAACTCTCAG AAACAGTGGAAACAGTCAAAGGACTTCAACCCACTGACACTGTACTTCAGAGAAAAGGAG ATGGAGAAAGAGTATCGGCTCTCCGCACTCCCCGCCTTCAAATACTATGCAGCCTGCACC TTCCTGGTTTTTCTCTCCAACTTCATCATCCAGATGCTGGTGACAAACAGGCCTCCAGCT CTGGCCATCACCTATGGCATCGCCTTCCTCCTCTTCTTCCTCCTCCTCTTCATCTGCTTC TCAGAGTACCTGACGAAGTGTGTCTTGAAAGGCCCCAAGATGCTACACTGGCTGCCCACA CTGTCTGTCCTGGTGGCCACACGGCCTGGACTGCGAGTTGCCCTGGGTACTGCCACCATC CTGCTCATCTTTGCCATGGCCATTGCCAGCCTGGTCTTCCTACCGGTGGCATCACACTGC CCTTTCCAGGCTCCCAATGTGTCCTCCATGGCTTTCAACCTCTCCTGGGAGCTCCCTGGA TCCCTGCCTCTCATCAGTGTCCCTTACTCCATGCACTGCTGCATGCTGGGCTTCCTCTCC TGCTCCCTCTTCCTACACATGAGCTTCGAGCTGAAGCTGCTGCTGCTCCTGCTGTGGCTG GCGGCCTCCTGCTCCCTCTTCCTGCACTCCCACGCCTGGCTGTCCGACTGCCTCGTCGCC CGCCTCTACCAGGGCACCTTGGACTCCAGGCCAGGGGTGCTGAAGGATCCCAAGTTGATG GGAGCAGTCTCCTTCTTTGTCTTCTTCTTCACCCTCCTGGTCCTGGCTCGGCAGAATGAG TATTACTGCCGCCTGGACTTCCTGTGGAAGAAGAAGCTGAGGCAGGAGCGGGAGGAGACA GAGACAATGGAGAACCTGACTCGCTTGCTCTTGGAGAACGTGCTCCCCGCGCACGTGGCC CCCCAGTTCATTGGCCAGAATCGGCGCAACGAGGACCTCTACCACCAGTCCTACGAGTGT GTCTGTGTCCTCTTCGCCTCAGTCCCAGACTTTAAGGAGTTTTACTCTGAATCCAACATC AACCATGAGGGGCTAGAGTGTCTGCGGCTGCTCAATGAGATCATTGCTGATTTTGATGAG CTACTCTCCAAGCCCAAGTTCAGTGGGGTGGAGAAGATCAAAACCATCGGCAGCACCTAC ATGGCAGCTACAGGCTTGAATGCCACCTCTGGACAGGACACCCAGCAGGATGCTGAGCGA AGTTGCAGCCACCTTGGCACCATGGTGGAATTTGCCGTGGCCCTTGGGTCTAAGCTGGAC GTCATCAACAAGCACTCATTCAACAACTTCCGCTTGCGTGTGGGGTTAAACCATGGACCT GTAGTGGCCGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 827-945, + strand, RNAz p=0.596194 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 827-945, + strand, RNAz p=0.596194 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK126468, + |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 131-231, gnl|bosTau2|chr10 (12177473-12177573) | |
| 131-231, gnl|canFam2|chr8 (7300738-7300884) | |
| 131-231, gnl|danRer3|chr7 (27969563-27969672) | |
| 131-231, gnl|dasNov1|scaffold_19037 (40919-41020) | |
| 131-231, gnl|echTel1|scaffold_293929 (92354-92515) | |
| 131-231, gnl|fr1|chrUn (214747159-214747018) | |
| 131-231, gnl|galGal2|chr11 (6649704-6649812) | |
| 131-231, gnl|hg17|chr14 (23864412-23864557) | |
| 131-231, gnl|Hg17|chr14 (23864522-23864422) | |
| 131-231, gnl|loxAfr1|scaffold_12312 (25577-25435) | |
| 131-231, gnl|mm7|chr14 (50641815-50641942) | |
| 131-231, gnl|Mm7|chr14 (50641925-50641825) | |
| 131-231, gnl|monDom2|scaffold_12 (25376280-25376142) | |
| 131-231, gnl|oryCun1|scaffold_201178 (47630-47507) | |
| 131-231, gnl|panTro1|chr15 (22768665-22768810) | |
| 131-231, gnl|rheMac2|chr7 (87220954-87221099) | |
| 131-231, gnl|rn3|chr15 (33951979-33952120) | |
| 131-231, gnl|tetNig1|chr21 (4463279-4463403) | |
| 131-231, gnl|xenTro1|scaffold_339 (844794-844652) | |
| 315-455, gnl|bosTau2|chr10 (12178423-12178563) | |
| 315-455, gnl|Hg17|chr14 (23863246-23863106) | |
| 315-455, gnl|Mm7|chr14 (50640913-50640773) | |
| 565-750, gnl|bosTau2|chr10 (12179746-12179931) | |
| 565-750, gnl|Hg17|chr14 (23862134-23861949) | |
| 565-750, gnl|Mm7|chr14 (50639783-50639598) | |
| 827-994, gnl|bosTau2|chr10 (12180640-12180807) | |
| 827-994, gnl|canFam2|chr8 (7297672-7297846) | |
| 827-994, gnl|danRer3|chr7 (27963116-27963295) | |
| 827-994, gnl|dasNov1|scaffold_212751 (3111-3277) | |
| 827-994, gnl|echTel1|scaffold_293929 (87988-88171) | |
| 827-994, gnl|fr1|chrUn (746675-746503) | |
| 827-994, gnl|galGal2|chr11 (6642448-6642612) | |
| 827-994, gnl|hg17|chr14 (23861101-23861278) | |
| 827-994, gnl|Hg17|chr14 (23861278-23861111) | |
| 827-994, gnl|loxAfr1|scaffold_12312 (28782-28605) | |
| 827-994, gnl|mm7|chr14 (50638719-50638896) | |
| 827-994, gnl|Mm7|chr14 (50638891-50638729) | |
| 827-994, gnl|monDom2|scaffold_12 (25380939-25380763) | |
| 827-994, gnl|oryCun1|scaffold_178102 (206256-206433) | |
| 827-994, gnl|panTro1|chr15 (22765351-22765528) | |
| 827-994, gnl|rheMac2|chr7 (87217372-87217549) | |
| 827-994, gnl|rn3|chr15 (33948584-33948762) | |
| 827-994, gnl|tetNig1|chr21 (4459028-4459192) | |
| 827-994, gnl|xenTro1|scaffold_339 (849184-849015) | |
| 1246-1364, gnl|bosTau2|chr10 (12182397-12182515) | |
| 1246-1364, gnl|canFam2|chr8 (7295395-7295496) | |
| 1246-1364, gnl|danRer3|chr7 (27956231-27956332) | |
| 1246-1364, gnl|dasNov1|scaffold_33379 (5828-5736) | |
| 1246-1364, gnl|echTel1|scaffold_293929 (85007-85081) | |
| 1246-1364, gnl|fr1|chrUn (747891-747792) | |
| 1246-1364, gnl|galGal2|chr11 (6640297-6640395) | |
| 1246-1364, gnl|hg17|chr14 (23858137-23858238) | |
| 1246-1364, gnl|Hg17|chr14 (23858261-23858143) | |
| 1246-1364, gnl|loxAfr1|scaffold_12312 (31387-31286) | |
| 1246-1364, gnl|mm7|chr14 (50637138-50637239) | |
| 1246-1364, gnl|Mm7|chr14 (50637262-50637144) | |
| 1246-1364, gnl|monDom2|scaffold_12 (25382257-25382156) | |
| 1246-1364, gnl|oryCun1|scaffold_178102 (203653-203753) | |
| 1246-1364, gnl|panTro1|chr15 (22762431-22762532) | |
| 1246-1364, gnl|rheMac2|chr7 (87214842-87214943) | |
| 1246-1364, gnl|rn3|chr15 (33946913-33947014) | |
| 1246-1364, gnl|tetNig1|chr21 (4457813-4457913) | |
| 1246-1364, gnl|xenTro1|scaffold_339 (849942-849841) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-231, gnl|bosTau2|chr10 (12177473-12177573) | |
| 131-231, gnl|canFam2|chr8 (7300738-7300884) | |
| 131-231, gnl|danRer3|chr7 (27969563-27969672) | |
| 131-231, gnl|dasNov1|scaffold_19037 (40919-41020) | |
| 131-231, gnl|echTel1|scaffold_293929 (92354-92515) | |
| 131-231, gnl|fr1|chrUn (214747159-214747018) | |
| 131-231, gnl|galGal2|chr11 (6649704-6649812) | |
| 131-231, gnl|hg17|chr14 (23864412-23864557) | |
| 131-231, gnl|Hg17|chr14 (23864522-23864422) | |
| 131-231, gnl|loxAfr1|scaffold_12312 (25577-25435) | |
| 131-231, gnl|mm7|chr14 (50641815-50641942) | |
| 131-231, gnl|Mm7|chr14 (50641925-50641825) | |
| 131-231, gnl|monDom2|scaffold_12 (25376280-25376142) | |
| 131-231, gnl|oryCun1|scaffold_201178 (47630-47507) | |
| 131-231, gnl|panTro1|chr15 (22768665-22768810) | |
| 131-231, gnl|rheMac2|chr7 (87220954-87221099) | |
| 131-231, gnl|rn3|chr15 (33951979-33952120) | |
| 131-231, gnl|tetNig1|chr21 (4463279-4463403) | |
| 131-231, gnl|xenTro1|scaffold_339 (844794-844652) | |
| 315-455, gnl|bosTau2|chr10 (12178423-12178563) | |
| 315-455, gnl|Hg17|chr14 (23863246-23863106) | |
| 315-455, gnl|Mm7|chr14 (50640913-50640773) | |
| 565-750, gnl|bosTau2|chr10 (12179746-12179931) | |
| 565-750, gnl|Hg17|chr14 (23862134-23861949) | |
| 565-750, gnl|Mm7|chr14 (50639783-50639598) | |
| 827-994, gnl|bosTau2|chr10 (12180640-12180807) | |
| 827-994, gnl|canFam2|chr8 (7297672-7297846) | |
| 827-994, gnl|danRer3|chr7 (27963116-27963295) | |
| 827-994, gnl|dasNov1|scaffold_212751 (3111-3277) | |
| 827-994, gnl|echTel1|scaffold_293929 (87988-88171) | |
| 827-994, gnl|fr1|chrUn (746675-746503) | |
| 827-994, gnl|galGal2|chr11 (6642448-6642612) | |
| 827-994, gnl|hg17|chr14 (23861101-23861278) | |
| 827-994, gnl|Hg17|chr14 (23861278-23861111) | |
| 827-994, gnl|loxAfr1|scaffold_12312 (28782-28605) | |
| 827-994, gnl|mm7|chr14 (50638719-50638896) | |
| 827-994, gnl|Mm7|chr14 (50638891-50638729) | |
| 827-994, gnl|monDom2|scaffold_12 (25380939-25380763) | |
| 827-994, gnl|oryCun1|scaffold_178102 (206256-206433) | |
| 827-994, gnl|panTro1|chr15 (22765351-22765528) | |
| 827-994, gnl|rheMac2|chr7 (87217372-87217549) | |
| 827-994, gnl|rn3|chr15 (33948584-33948762) | |
| 827-994, gnl|tetNig1|chr21 (4459028-4459192) | |
| 827-994, gnl|xenTro1|scaffold_339 (849184-849015) | |
| 1246-1364, gnl|bosTau2|chr10 (12182397-12182515) | |
| 1246-1364, gnl|canFam2|chr8 (7295395-7295496) | |
| 1246-1364, gnl|danRer3|chr7 (27956231-27956332) | |
| 1246-1364, gnl|dasNov1|scaffold_33379 (5828-5736) | |
| 1246-1364, gnl|echTel1|scaffold_293929 (85007-85081) | |
| 1246-1364, gnl|fr1|chrUn (747891-747792) | |
| 1246-1364, gnl|galGal2|chr11 (6640297-6640395) | |
| 1246-1364, gnl|hg17|chr14 (23858137-23858238) | |
| 1246-1364, gnl|Hg17|chr14 (23858261-23858143) | |
| 1246-1364, gnl|loxAfr1|scaffold_12312 (31387-31286) | |
| 1246-1364, gnl|mm7|chr14 (50637138-50637239) | |
| 1246-1364, gnl|Mm7|chr14 (50637262-50637144) | |
| 1246-1364, gnl|monDom2|scaffold_12 (25382257-25382156) | |
| 1246-1364, gnl|oryCun1|scaffold_178102 (203653-203753) | |
| 1246-1364, gnl|panTro1|chr15 (22762431-22762532) | |
| 1246-1364, gnl|rheMac2|chr7 (87214842-87214943) | |
| 1246-1364, gnl|rn3|chr15 (33946913-33947014) | |
| 1246-1364, gnl|tetNig1|chr21 (4457813-4457913) | |
| 1246-1364, gnl|xenTro1|scaffold_339 (849942-849841) |