Ss1.1-Spl1-SPL01H070053.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTTTTCGCCGCCGCCTCGGTGCGAGTGGTGGTGCGCTCGTCTGGTCTCCGTCGCTA AGGCCCGAGCCAGGGACGTTCCTGAGAGAGCTGTGCTCTCGGGCACAAAGAATCGGACTC CGGTCTGAAGAAGACTCTTGAATCATGGGTGATGTTAAAAATTTTCTGTATGCCTGGTGT GGCAAAAGGAAGATGACTCCATCCTATGAAATTAGAGCAGTGGGGAATAAAAACAGGCAG AAATTCATGTGCGAGGTTCGAGTGGAAGGATATAATTACACCGGCATGGGTAATTCCACC AATAAAAAAGACGCACAGAGCAATGCTGCCAGAGACTTTGTTAACTATTTGGTTCGGATA AATGAAGTAAAGAGTGAAGAAGTCCCAACTATGGGGGTAGCACCCACTCCTCTCACAACT GCTGATTCACCTGACGACACAGCAAATGCTGGTGGAGGTTTACCAGCAACCATGGGAGGC CCTCTTCCTCCACATCTGGCTCTCAAGGCAGAAAATAATTCTGGTTATGGTGTTACTGGG CCCACCTGGGATCGTGGAGCCAACTTGAAGGATTATTACTCAAGAAAGGAGGAACAAGAA GTACAAGCGACTCTTGAATCTGAAGAAGTGGATTTAAATGCTGGACTTCATGGAAACTGG ACCTTGGAAAATGCTAAGGCTCGTCTGAACCAGTATTTCCAAAAAGAAAAGATCCAAGGA GAATATAAGTACACCCAAGTGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTTTTCGCCGCCGCCTCGGTGCGAGTGGTGGTGCGCTCGTCTGGTCTCCGTCGCTA AGGCCCGAGCCAGGGACGTTCCTGAGAGAGCTGTGCTCTCGGGCACAAAGAATCGGACTC CGGTCTGAAGAAGACTCTTGAATCATGGGTGATGTTAAAAATTTTCTGTATGCCTGGTGT GGCAAAAGGAAGATGACTCCATCCTATGAAATTAGAGCAGTGGGGAATAAAAACAGGCAG AAATTCATGTGCGAGGTTCGAGTGGAAGGATATAATTACACCGGCATGGGTAATTCCACC AATAAAAAAGACGCACAGAGCAATGCTGCCAGAGACTTTGTTAACTATTTGGTTCGGATA AATGAAGTAAAGAGTGAAGAAGTCCCAACTATGGGGGTAGCACCCACTCCTCTCACAACT GCTGATTCACCTGACGACACAGCAAATGCTGGTGGAGGTTTACCAGCAACCATGGGAGGC CCTCTTCCTCCACATCTGGCTCTCAAGGCAGAAAATAATTCTGGTTATGGTGTTACTGGG CCCACCTGGGATCGTGGAGCCAACTTGAAGGATTATTACTCAAGAAAGGAGGAACAAGAA GTACAAGCGACTCTTGAATCTGAAGAAGTGGATTTAAATGCTGGACTTCATGGAAACTGG ACCTTGGAAAATGCTAAGGCTCGTCTGAACCAGTATTTCCAAAAAGAAAAGATCCAAGGA GAATATAAGTACACCCAAGTGGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 122-257, + strand, RNAz p=0.757068 | |
| 604-722, + strand, RNAz p=0.605924 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 122-257, + strand, RNAz p=0.757068 | |
| 604-722, + strand, RNAz p=0.605924 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 122-257, gnl|bosTau2|chr16 (45404357-45404222) | |
| 122-257, gnl|canFam2|chr7 (19198098-19198229) | |
| 122-257, gnl|danRer3|chr19 (21007405-21007289) | |
| 122-257, gnl|dasNov1|scaffold_540 (268959-269090) | |
| 122-257, gnl|echTel1|scaffold_321639 (40493-40624) | |
| 122-257, gnl|fr1|chrUn (286270331-286270195) | |
| 122-257, gnl|Hg17|chr1 (179543336-179543471) | |
| 122-257, gnl|hg17|chr13 (76456982-76457113) | |
| 122-257, gnl|loxAfr1|scaffold_12266 (3775-3644) | |
| 122-257, gnl|mm7|chr1 (153444944-153444813) | |
| 122-257, gnl|Mm7|chr1 (153444943-153444808) | |
| 122-257, gnl|monDom2|scaffold_16 (36600507-36600628) | |
| 122-257, gnl|oryCun1|scaffold_28570 (192-61) | |
| 122-257, gnl|panTro1|chr14 (59033280-59033411) | |
| 122-257, gnl|rheMac2|chr17 (57472792-57472923) | |
| 122-257, gnl|rn3|chr13 (68519339-68519208) | |
| 122-257, gnl|tetNig1|chrUn_random (103431155-103431264) | |
| 122-257, gnl|xenTro1|scaffold_126 (445364-445483) | |
| 604-744, gnl|bosTau2|chr16 (45396591-45396451) | |
| 604-744, gnl|canFam2|chr7 (19223132-19223298) | |
| 604-744, gnl|canFam2|chr7 (19223144-19223289) | |
| 604-744, gnl|danRer3|chr19 (21005225-21005051) | |
| 604-744, gnl|danRer3|chr19 (21005205-21005055) | |
| 604-744, gnl|fr1|chrUn (286269215-286269057) | |
| 604-744, gnl|fr1|chrUn (286269211-286269065) | |
| 604-744, gnl|hg17|chr1 (179554809-179554976) | |
| 604-744, gnl|Hg17|chr1 (179554816-179554956) | |
| 604-744, gnl|hg17|chr13 (76457467-76457617) | |
| 604-744, gnl|loxAfr1|scaffold_7586 (68637-68804) | |
| 604-744, gnl|loxAfr1|scaffold_7586 (68651-68800) | |
| 604-744, gnl|mm7|chr1 (153439274-153439107) | |
| 604-744, gnl|mm7|chr1 (153439260-153439111) | |
| 604-744, gnl|Mm7|chr1 (153439265-153439125) | |
| 604-744, gnl|monDom2|scaffold_16 (36605427-36605601) | |
| 604-744, gnl|monDom2|scaffold_16 (36605447-36605596) | |
| 604-744, gnl|oryCun1|scaffold_181392 (5131-4963) | |
| 604-744, gnl|oryCun1|scaffold_181392 (5118-4967) | |
| 604-744, gnl|panTro1|chr1 (162082624-162082791) | |
| 604-744, gnl|panTro1|chr14 (59033765-59033915) | |
| 604-744, gnl|rheMac2|chr1 (187805286-187805119) | |
| 604-744, gnl|rheMac2|chr1 (187805272-187805128) | |
| 604-744, gnl|rn3|chr13 (68510877-68510710) | |
| 604-744, gnl|rn3|chr13 (68510863-68510719) | |
| 604-744, gnl|tetNig1|chrUn_random (103432004-103432165) | |
| 604-744, gnl|tetNig1|chrUn_random (103432011-103432161) | |
| 604-744, gnl|xenTro1|scaffold_126 (448596-448772) | |
| 604-744, gnl|xenTro1|scaffold_126 (448609-448758) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-257, gnl|bosTau2|chr16 (45404357-45404222) | |
| 122-257, gnl|canFam2|chr7 (19198098-19198229) | |
| 122-257, gnl|danRer3|chr19 (21007405-21007289) | |
| 122-257, gnl|dasNov1|scaffold_540 (268959-269090) | |
| 122-257, gnl|echTel1|scaffold_321639 (40493-40624) | |
| 122-257, gnl|fr1|chrUn (286270331-286270195) | |
| 122-257, gnl|Hg17|chr1 (179543336-179543471) | |
| 122-257, gnl|hg17|chr13 (76456982-76457113) | |
| 122-257, gnl|loxAfr1|scaffold_12266 (3775-3644) | |
| 122-257, gnl|mm7|chr1 (153444944-153444813) | |
| 122-257, gnl|Mm7|chr1 (153444943-153444808) | |
| 122-257, gnl|monDom2|scaffold_16 (36600507-36600628) | |
| 122-257, gnl|oryCun1|scaffold_28570 (192-61) | |
| 122-257, gnl|panTro1|chr14 (59033280-59033411) | |
| 122-257, gnl|rheMac2|chr17 (57472792-57472923) | |
| 122-257, gnl|rn3|chr13 (68519339-68519208) | |
| 122-257, gnl|tetNig1|chrUn_random (103431155-103431264) | |
| 122-257, gnl|xenTro1|scaffold_126 (445364-445483) | |
| 604-744, gnl|bosTau2|chr16 (45396591-45396451) | |
| 604-744, gnl|canFam2|chr7 (19223132-19223298) | |
| 604-744, gnl|canFam2|chr7 (19223144-19223289) | |
| 604-744, gnl|danRer3|chr19 (21005225-21005051) | |
| 604-744, gnl|danRer3|chr19 (21005205-21005055) | |
| 604-744, gnl|fr1|chrUn (286269215-286269057) | |
| 604-744, gnl|fr1|chrUn (286269211-286269065) | |
| 604-744, gnl|hg17|chr1 (179554809-179554976) | |
| 604-744, gnl|Hg17|chr1 (179554816-179554956) | |
| 604-744, gnl|hg17|chr13 (76457467-76457617) | |
| 604-744, gnl|loxAfr1|scaffold_7586 (68637-68804) | |
| 604-744, gnl|loxAfr1|scaffold_7586 (68651-68800) | |
| 604-744, gnl|mm7|chr1 (153439274-153439107) | |
| 604-744, gnl|mm7|chr1 (153439260-153439111) | |
| 604-744, gnl|Mm7|chr1 (153439265-153439125) | |
| 604-744, gnl|monDom2|scaffold_16 (36605427-36605601) | |
| 604-744, gnl|monDom2|scaffold_16 (36605447-36605596) | |
| 604-744, gnl|oryCun1|scaffold_181392 (5131-4963) | |
| 604-744, gnl|oryCun1|scaffold_181392 (5118-4967) | |
| 604-744, gnl|panTro1|chr1 (162082624-162082791) | |
| 604-744, gnl|panTro1|chr14 (59033765-59033915) | |
| 604-744, gnl|rheMac2|chr1 (187805286-187805119) | |
| 604-744, gnl|rheMac2|chr1 (187805272-187805128) | |
| 604-744, gnl|rn3|chr13 (68510877-68510710) | |
| 604-744, gnl|rn3|chr13 (68510863-68510719) | |
| 604-744, gnl|tetNig1|chrUn_random (103432004-103432165) | |
| 604-744, gnl|tetNig1|chrUn_random (103432011-103432161) | |
| 604-744, gnl|xenTro1|scaffold_126 (448596-448772) | |
| 604-744, gnl|xenTro1|scaffold_126 (448609-448758) |