Non-Coding RNA Search

Ss1.1-Spl1-SPL01H070098.5

Sequence:


               
               ATACAGTAGAAAAAAGGGCAGTATTATCACTTGGCAGCCCTGAGATTCACCCAGGATTTG
CCACTTAAATCCTTGTGACCTTGAGCAAGTTATTTAATCTCTGAACCTTATTGAAAGGCT
CATCTGAAGAATTTTGAAATGAGATCATGAACATAGAGCTCCTGGAACAAGGTAGGAGAA
CAGGTATAGTCCTCTTCCCCTTCAGTAGAAAGTCATTCTTCCACTTATGGCATGGAGGCA
TGAACCCCTAAAACTCGTGATCCTTCTGGAAATAACGGCAGTAAATTCTCGACATAAACA
ACAATGCAGAGGTTCTGGAGACTGAATAAATGCTGACAGACCTTTGGAGAGAAGTCAAAT
CTTGGAGCACGTGAACCAACACAGAGTGGGTTTTTATAAATGGCTTTACCCCTAAACTCA
ACTCTGGCAGAAAAACAGTCTCTTTGTTACCAGAGGAATTAGGGCCACCACGTAACAAGG
GAGGAAAAACCCCAAAAGGGCAGCTCTAGAGAAATGGAATTAATTCTGTGTGGAAGCTCA
GTACATCTCTGACTGACTCTTGGACCAATCCAGTGCATCATGTAAGGAGCTTGGAAATCT
TCACTCTGTCCTCACAAGGAGTAAAAACCTGAACACTGAAAGTTAACA------------
------------------------------------------------------------
GTGTAACTTGGCAGAGCAAAAGCACAGGAGCAGAATCCTGCCACTGGAACCGCGACCAGG
GTAGGACTGTGGTTCTAGAGGCTCAGTTTGGATAGGCTTGAAAGTGAGAAACAACTGGGG
GGCCCGTTTTAGAGGGCTGGTTTCATGAGGTTTAACTCCAGAAATGTCCACCAGGTTCTC
AGGGTAAAGATCTAATAAAAATTT------------------------------------
------------------------------------------------------------
------------------------------------------------GGAAAATATACC
CAGCTCCAATTCTGTGGTTACACATCTCATCTCAGATGGGCAGGACCGAGAACCCTGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACAGTAGAAAAAAGGGCAGTATTATCACTTGGCAGCCCTGAGATTCACCCAGGATTTG
CCACTTAAATCCTTGTGACCTTGAGCAAGTTATTTAATCTCTGAACCTTATTGAAAGGCT
CATCTGAAGAATTTTGAAATGAGATCATGAACATAGAGCTCCTGGAACAAGGTAGGAGAA
CAGGTATAGTCCTCTTCCCCTTCAGTAGAAAGTCATTCTTCCACTTATGGCATGGAGGCA
TGAACCCCTAAAACTCGTGATCCTTCTGGAAATAACGGCAGTAAATTCTCGACATAAACA
ACAATGCAGAGGTTCTGGAGACTGAATAAATGCTGACAGACCTTTGGAGAGAAGTCAAAT
CTTGGAGCACGTGAACCAACACAGAGTGGGTTTTTATAAATGGCTTTACCCCTAAACTCA
ACTCTGGCAGAAAAACAGTCTCTTTGTTACCAGAGGAATTAGGGCCACCACGTAACAAGG
GAGGAAAAACCCCAAAAGGGCAGCTCTAGAGAAATGGAATTAATTCTGTGTGGAAGCTCA
GTACATCTCTGACTGACTCTTGGACCAATCCAGTGCATCATGTAAGGAGCTTGGAAATCT
TCACTCTGTCCTCACAAGGAGTAAAAACCTGAACACTGAAAGTTAACA------------
------------------------------------------------------------
GTGTAACTTGGCAGAGCAAAAGCACAGGAGCAGAATCCTGCCACTGGAACCGCGACCAGG
GTAGGACTGTGGTTCTAGAGGCTCAGTTTGGATAGGCTTGAAAGTGAGAAACAACTGGGG
GGCCCGTTTTAGAGGGCTGGTTTCATGAGGTTTAACTCCAGAAATGTCCACCAGGTTCTC
AGGGTAAAGATCTAATAAAAATTT------------------------------------
------------------------------------------------------------
------------------------------------------------GGAAAATATACC
CAGCTCCAATTCTGTGGTTACACATCTCATCTCAGATGGGCAGGACCGAGAACCCTGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               71-227, - strand, RNAz p=0.973302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-227, - strand, RNAz p=0.973302

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               31-648, gnl|bosTau2|chr24 (26478412-26477787)
               

               
               31-648, gnl|Hg17|chr9 (86179724-86179071)
               


               
               652-850, gnl|bosTau2|chr24 (26477708-26477503)
               

               
               652-850, gnl|canFam2|chr1 (76474792-76474357)
               

               
               652-850, gnl|hg17|chr9 (86178657-86179120)
               

               
               652-850, gnl|Hg17|chr9 (86178986-86178766)
               

               
               652-850, gnl|panTro1|chr11 (70231617-70232080)
               

               
               652-850, gnl|rheMac2|chr15 (94900917-94901384)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-648, gnl|bosTau2|chr24 (26478412-26477787)
               

               
               31-648, gnl|Hg17|chr9 (86179724-86179071)
               


               
               652-850, gnl|bosTau2|chr24 (26477708-26477503)
               

               
               652-850, gnl|canFam2|chr1 (76474792-76474357)
               

               
               652-850, gnl|hg17|chr9 (86178657-86179120)
               

               
               652-850, gnl|Hg17|chr9 (86178986-86178766)
               

               
               652-850, gnl|panTro1|chr11 (70231617-70232080)
               

               
               652-850, gnl|rheMac2|chr15 (94900917-94901384)

	31-648, gnl\|bosTau2\|chr24 (26478412-26477787)
	31-648, gnl\|Hg17\|chr9 (86179724-86179071)

	652-850, gnl\|bosTau2\|chr24 (26477708-26477503)
	652-850, gnl\|canFam2\|chr1 (76474792-76474357)
	652-850, gnl\|hg17\|chr9 (86178657-86179120)
	652-850, gnl\|Hg17\|chr9 (86178986-86178766)
	652-850, gnl\|panTro1\|chr11 (70231617-70232080)
	652-850, gnl\|rheMac2\|chr15 (94900917-94901384)