Non-Coding RNA Search

Ss1.1-Spl1-SPL01H110032.5

Sequence:


               
               AGATCTCGACTGCGGCACCTCGGCGGCCGCGTCAGCCACTCGGCTCTGCAGGTTCCCTGG
GCCGCCCAGCCGCGCAGCGCCCTGCGCCCCCCCGGCCTTCCGCCTTGGTCCCCATCGCGG
GGCGTCGCGACGCCTGGGCCCGGCGATGAGCGCGAGGAGCCACCATGAGCGCAGACAGCA
GCCCGCTCGTGGGCAACCCGCCCACCGGTTATGGGACCCTGACGATAGAGACATCTATAG
ATCCCCTCAGCTCCTCAGTTTCATCCGTGAGGCTCAGCGGCTACTGTGGCAGTCCATGGA
GAGTCATAGGCTATCACATCGTGGTCTGGATGATGGCAGGGATCCCTTTGCTGCTCTTCC
GATGGAAGCCCGTTTGGGGGGTCCGGCTGCGGCTCCAGCCATGCAACCTGGCCCGCGCCG
AAACACTCGTTATCGAAATAAGAGACAAAGAGGATAGTTCGTGGCAGCTTTATACCGTCC
AGGTGCAGACTGAGGCCATCAGCGAAGGCAGCCTGGAGCTGCCCCCACAGGCCCAGGTGG
AGGACGGCCGGAGCCAGGTGGCTGTGGGGGCAGTGCCAGAGCGTGCTTGGAAGGACACGG
CCCAGCTCCGCAGGACGGAAGAGGCACAGCGGACACTACGCTACTACCTCTTCCAGGGCC
GGCGCTACATCTGGATCGAGACCCAGCAGGCCTTCTGCCAAGTCAGCCTGATGGACCATG
GCCGCACCTGTGACGACATCCACCGCTCATGCACCGGCCTCAGCCTCCAGGACCAAACCG
TGCGGAAGACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCTCGACTGCGGCACCTCGGCGGCCGCGTCAGCCACTCGGCTCTGCAGGTTCCCTGG
GCCGCCCAGCCGCGCAGCGCCCTGCGCCCCCCCGGCCTTCCGCCTTGGTCCCCATCGCGG
GGCGTCGCGACGCCTGGGCCCGGCGATGAGCGCGAGGAGCCACCATGAGCGCAGACAGCA
GCCCGCTCGTGGGCAACCCGCCCACCGGTTATGGGACCCTGACGATAGAGACATCTATAG
ATCCCCTCAGCTCCTCAGTTTCATCCGTGAGGCTCAGCGGCTACTGTGGCAGTCCATGGA
GAGTCATAGGCTATCACATCGTGGTCTGGATGATGGCAGGGATCCCTTTGCTGCTCTTCC
GATGGAAGCCCGTTTGGGGGGTCCGGCTGCGGCTCCAGCCATGCAACCTGGCCCGCGCCG
AAACACTCGTTATCGAAATAAGAGACAAAGAGGATAGTTCGTGGCAGCTTTATACCGTCC
AGGTGCAGACTGAGGCCATCAGCGAAGGCAGCCTGGAGCTGCCCCCACAGGCCCAGGTGG
AGGACGGCCGGAGCCAGGTGGCTGTGGGGGCAGTGCCAGAGCGTGCTTGGAAGGACACGG
CCCAGCTCCGCAGGACGGAAGAGGCACAGCGGACACTACGCTACTACCTCTTCCAGGGCC
GGCGCTACATCTGGATCGAGACCCAGCAGGCCTTCTGCCAAGTCAGCCTGATGGACCATG
GCCGCACCTGTGACGACATCCACCGCTCATGCACCGGCCTCAGCCTCCAGGACCAAACCG
TGCGGAAGACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834917|ref|XP_599332.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834917|ref|XP_599332.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               508-623, + strand, RNAz p=0.859759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               508-623, + strand, RNAz p=0.859759

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY461712, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY461712, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               7-174, gnl|bosTau2|chr2 (86171560-86171727)
               

               
               7-174, gnl|Hg17|chr1 (17083690-17083530)
               

               
               7-174, gnl|Mm7|chr4 (140365346-140365517)
               


               
               269-464, gnl|bosTau2|chr2 (86145219-86145414)
               

               
               269-464, gnl|Hg17|chr1 (17077358-17077170)
               

               
               269-464, gnl|Mm7|chr4 (140370778-140370968)
               


               
               508-623, gnl|bosTau2|chr2 (86145923-86146038)
               

               
               508-623, gnl|Hg17|chr1 (17076626-17076511)
               

               
               508-623, gnl|Mm7|chr4 (140372385-140372500)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-174, gnl|bosTau2|chr2 (86171560-86171727)
               

               
               7-174, gnl|Hg17|chr1 (17083690-17083530)
               

               
               7-174, gnl|Mm7|chr4 (140365346-140365517)
               


               
               269-464, gnl|bosTau2|chr2 (86145219-86145414)
               

               
               269-464, gnl|Hg17|chr1 (17077358-17077170)
               

               
               269-464, gnl|Mm7|chr4 (140370778-140370968)
               


               
               508-623, gnl|bosTau2|chr2 (86145923-86146038)
               

               
               508-623, gnl|Hg17|chr1 (17076626-17076511)
               

               
               508-623, gnl|Mm7|chr4 (140372385-140372500)

	7-174, gnl\|bosTau2\|chr2 (86171560-86171727)
	7-174, gnl\|Hg17\|chr1 (17083690-17083530)
	7-174, gnl\|Mm7\|chr4 (140365346-140365517)

	269-464, gnl\|bosTau2\|chr2 (86145219-86145414)
	269-464, gnl\|Hg17\|chr1 (17077358-17077170)
	269-464, gnl\|Mm7\|chr4 (140370778-140370968)

	508-623, gnl\|bosTau2\|chr2 (86145923-86146038)
	508-623, gnl\|Hg17\|chr1 (17076626-17076511)
	508-623, gnl\|Mm7\|chr4 (140372385-140372500)