Non-Coding RNA Search

Ss1.1-Tes1-TES01A010050.5

Sequence:


               
               TGTTTCTACATCGGTATTTATGTTTGTGACAAAGGTCTCTCATGGTGTTTCTTACTCTTT
GCTAAGTCTCTGAAAGTGATCTGTCACGTCTAGCAGTGTTCTCCAGCAAAGTGGCTCAGA
ACAGTGAATTCCACTCCCTCTCCAGCATGATCTGTGCCTCTAACCTCCTTTATCAGCCTA
AAGAAATTCAATTTCTAGAAATGGACAGTTTGCTCAAGCAGGCCCTTCCACTAAGGAAGG
AATTTAGCAAAAACAACATATGTACAGTCAACACCAAACGCTGCCCTTCGGGTTAATCCA
GTCTTACAGATGGATTTAACATACAGGTTTCAAATCAACAAACCTTTATTGAGGGCCGTT
ATGTGCCAGGCGTGGAGCAGGGCGCTGGGGAGCTAAAAATGAAAAAGACACAGTCTCTTT
CAGTCTGAAAACATTTTTGCTGGCTTGCAAGTTTTTCACCAGATCCTCCCAGACTTACCA
AAGCATTCCCTTTGACTTAGAACACTCAAGCCCTTCTTTTCAACGGGTCCCTTTAATGCC
AGAGTACACATTGGGCAAGGAGAAGTGGGTGGTTATAGATTTCCACTCAATTTGGAAATT
AACAGCCAGTGATGAAGCAAAAAGGTGCTAGACTGGGAATCAGACAGCTCGCTCTCTAGT
CTCAGCATAGTCACTTATTGGTTTATACAGCCTTGACCGGGTCCTGTGACCTCTCAGGCC
CTTGGTGTCTGTAGGTGAAATGGGTTGTTGTGAGGACCGCATGAGGTAGTGAGGGGCCGG
GTGAAAATCCACGGAGCTCTAGGCAAACAAAGGGGATTCTATTCTGATGGGCTGGGGAGA
GGGTGTGTGTGTGTGTTTGCAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCTACATCGGTATTTATGTTTGTGACAAAGGTCTCTCATGGTGTTTCTTACTCTTT
GCTAAGTCTCTGAAAGTGATCTGTCACGTCTAGCAGTGTTCTCCAGCAAAGTGGCTCAGA
ACAGTGAATTCCACTCCCTCTCCAGCATGATCTGTGCCTCTAACCTCCTTTATCAGCCTA
AAGAAATTCAATTTCTAGAAATGGACAGTTTGCTCAAGCAGGCCCTTCCACTAAGGAAGG
AATTTAGCAAAAACAACATATGTACAGTCAACACCAAACGCTGCCCTTCGGGTTAATCCA
GTCTTACAGATGGATTTAACATACAGGTTTCAAATCAACAAACCTTTATTGAGGGCCGTT
ATGTGCCAGGCGTGGAGCAGGGCGCTGGGGAGCTAAAAATGAAAAAGACACAGTCTCTTT
CAGTCTGAAAACATTTTTGCTGGCTTGCAAGTTTTTCACCAGATCCTCCCAGACTTACCA
AAGCATTCCCTTTGACTTAGAACACTCAAGCCCTTCTTTTCAACGGGTCCCTTTAATGCC
AGAGTACACATTGGGCAAGGAGAAGTGGGTGGTTATAGATTTCCACTCAATTTGGAAATT
AACAGCCAGTGATGAAGCAAAAAGGTGCTAGACTGGGAATCAGACAGCTCGCTCTCTAGT
CTCAGCATAGTCACTTATTGGTTTATACAGCCTTGACCGGGTCCTGTGACCTCTCAGGCC
CTTGGTGTCTGTAGGTGAAATGGGTTGTTGTGAGGACCGCATGAGGTAGTGAGGGGCCGG
GTGAAAATCCACGGAGCTCTAGGCAAACAAAGGGGATTCTATTCTGATGGGCTGGGGAGA
GGGTGTGTGTGTGTGTTTGCAGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               223-328, - strand, RNAz p=0.557436
               

               
               569-688, + strand, RNAz p=0.797977

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-328, - strand, RNAz p=0.557436
               

               
               569-688, + strand, RNAz p=0.797977

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               71-841, gnl|bosTau2|chr9 (51702770-51703525)
               

               
               71-841, gnl|Hg17|chr6 (149424980-149425763)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-841, gnl|bosTau2|chr9 (51702770-51703525)
               

               
               71-841, gnl|Hg17|chr6 (149424980-149425763)

	223-328, - strand, RNAz p=0.557436
	569-688, + strand, RNAz p=0.797977

	71-841, gnl\|bosTau2\|chr9 (51702770-51703525)
	71-841, gnl\|Hg17\|chr6 (149424980-149425763)