Ss1.1-Tes1-TES01A040088.5
|
GCCCAGGATGGCTTCTCTGGTATACGCCACAAACGCAGTGCAACGGATGGCCTCAGGTTG
CCAGTGATGATGGTTTTGGATCATGCTCAGTAATGGGTAGGACAGATGGAACATGCCCAT
GGATGGCCTTCATTAAAAAACAAAAACAACCTGCCTCTCAAAGTTCAGCAAAACGGGTGA
TAAAGCCTAACAGGCAGATGCCATTTTTAAATCCCTCCTCGCTCTTTTTTTCTCTCTCTG
TGTTGCACTGATACGAGCCTTGAAAATCTGTTCACAGCAGGAACCCCTGAAACTACATGA
ATGGTCCATTTTCCTGACAACCAGTTTTATCCCCAAGAGTTCGAAATACAGAGATTTCTA
CCAGGTCCCTTCAGTGCAGAGGACATGTCCTGAATATATCTCTTCAGTCTCTCCCCCTCC
CTCAACTTTCCTGATTTTTCTACCAGTCCCTGACTTGACCTTTGATGATCATGATAACGT
TTCTGCAAACTGAAGGCACCGCATTCAGGCCAGATCGGTGGCTTTTTTAGTGCCTTCCTG
TCTCCACACTTTCATTGGTTTCCATCTGACAGCTGATTGATTGATGGCCTGGTATTCACT
TCATCGCACCTGCCCGGCCAGCCGTTAATGCAGTTATAACATCCAAGGTCAAAGGAGAGT
GTGGTCACATGTAGGACTGCATGTCCATTCTCAGAGCCAGGGCAGAACTGGGGTTTCAGA
AGCTGGAATCATGGAGAGAGGCAGTACTTGAGTGGGTGGGATCACCCAGAACTGATCACA
CTCAATCAAAAGCTTCCCCGTAGAGACCACCATGTGGGCCTTGAGCTGCAGAAAGATGCA
CACGTCAGAACCGCCGCTCCAAGATGATTCGGGAAATTGCCTGCCAGCCACATGGCGCAT
GAACACGGGACCCTGGAGAAGGGTCCTTTTTATTGCTGTTTAGGTTGATTTTCCAAACTG
GCCTCAAAGGTCCTGCTTCAGAGCACTTAGGAAAGATGGTGCAAGGTCACTGTGGAAGGA
AAGGCTACTTGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCCAGGATGGCTTCTCTGGTATACGCCACAAACGCAGTGCAACGGATGGCCTCAGGTTG
CCAGTGATGATGGTTTTGGATCATGCTCAGTAATGGGTAGGACAGATGGAACATGCCCAT
GGATGGCCTTCATTAAAAAACAAAAACAACCTGCCTCTCAAAGTTCAGCAAAACGGGTGA
TAAAGCCTAACAGGCAGATGCCATTTTTAAATCCCTCCTCGCTCTTTTTTTCTCTCTCTG
TGTTGCACTGATACGAGCCTTGAAAATCTGTTCACAGCAGGAACCCCTGAAACTACATGA
ATGGTCCATTTTCCTGACAACCAGTTTTATCCCCAAGAGTTCGAAATACAGAGATTTCTA
CCAGGTCCCTTCAGTGCAGAGGACATGTCCTGAATATATCTCTTCAGTCTCTCCCCCTCC
CTCAACTTTCCTGATTTTTCTACCAGTCCCTGACTTGACCTTTGATGATCATGATAACGT
TTCTGCAAACTGAAGGCACCGCATTCAGGCCAGATCGGTGGCTTTTTTAGTGCCTTCCTG
TCTCCACACTTTCATTGGTTTCCATCTGACAGCTGATTGATTGATGGCCTGGTATTCACT
TCATCGCACCTGCCCGGCCAGCCGTTAATGCAGTTATAACATCCAAGGTCAAAGGAGAGT
GTGGTCACATGTAGGACTGCATGTCCATTCTCAGAGCCAGGGCAGAACTGGGGTTTCAGA
AGCTGGAATCATGGAGAGAGGCAGTACTTGAGTGGGTGGGATCACCCAGAACTGATCACA
CTCAATCAAAAGCTTCCCCGTAGAGACCACCATGTGGGCCTTGAGCTGCAGAAAGATGCA
CACGTCAGAACCGCCGCTCCAAGATGATTCGGGAAATTGCCTGCCAGCCACATGGCGCAT
GAACACGGGACCCTGGAGAAGGGTCCTTTTTATTGCTGTTTAGGTTGATTTTCCAAACTG
GCCTCAAAGGTCCTGCTTCAGAGCACTTAGGAAAGATGGTGCAAGGTCACTGTGGAAGGA
AAGGCTACTTGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
574-687, - strand, RNAmicro p=0.911828 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
574-687, - strand, RNAmicro p=0.911828 |
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4-656, gnl|bosTau2|chr24 (28366359-28367004) |
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4-656, gnl|Hg17|chr18 (8311852-8312524) |
| |
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683-810, gnl|bosTau2|chr24 (28367339-28367469) |
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683-810, gnl|canFam2|chr7 (77563740-77563902) |
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683-810, gnl|echTel1|scaffold_162240 (1067-1205) |
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683-810, gnl|hg17|chr18 (8312579-8312747) |
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683-810, gnl|Hg17|chr18 (8312578-8312709) |
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683-810, gnl|loxAfr1|scaffold_24850 (35059-34913) |
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683-810, gnl|mm7|chr17 (65017061-65016913) |
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683-810, gnl|oryCun1|scaffold_177861 (24944-25120) |
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683-810, gnl|panTro1|chr17 (4372688-4372520) |
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683-810, gnl|rheMac2|chr18 (6033726-6033559) |
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683-810, gnl|rn3|chr9 (106071258-106071112) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-656, gnl|bosTau2|chr24 (28366359-28367004) |
|
4-656, gnl|Hg17|chr18 (8311852-8312524) |
| |
|
683-810, gnl|bosTau2|chr24 (28367339-28367469) |
|
683-810, gnl|canFam2|chr7 (77563740-77563902) |
|
683-810, gnl|echTel1|scaffold_162240 (1067-1205) |
|
683-810, gnl|hg17|chr18 (8312579-8312747) |
|
683-810, gnl|Hg17|chr18 (8312578-8312709) |
|
683-810, gnl|loxAfr1|scaffold_24850 (35059-34913) |
|
683-810, gnl|mm7|chr17 (65017061-65016913) |
|
683-810, gnl|oryCun1|scaffold_177861 (24944-25120) |
|
683-810, gnl|panTro1|chr17 (4372688-4372520) |
|
683-810, gnl|rheMac2|chr18 (6033726-6033559) |
|
683-810, gnl|rn3|chr9 (106071258-106071112) |
