Ss1.1-Tes1-TES01A080009.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTGTATTTTTAAATCTCTGAAAGTGTTGTTTGAGCCTGGCTTCCCGGCGCTGTCCT CAGGAATGTGGGCCCATGTCCCCTGACCAGGGCTTAGGAGTTCGTCCTCTCGCTTCTGGA GAAGATGCAGACTCAGGAGATCCTGAGGATGCTGCGGCTGCCTGAGCTGGGGGACTTGGG CCAGTTTTTCCGCAGCCTCTCAGCCACCACCCTCGTGAGTATGGGTGCGCTGGCCGCCAT CCTCGCCTACTGGTTCACCCACCGGCCTAAGGCCTTGCAGCCGCCGTGCGATCTCCTGAT GCAGTCAGAGGAAGTGGAGGACAGTGGTGGGGCCCGGCGATCCGTGATCGGGGATGGCCC TCAGCTGCTCACCCACTACTATGATGATGCCAGGACCATGTACGAGGTGTTCCGTCGTGG GCTTAGCATCTCAGGGAATGGACCCTGTCTTGGCTTCAGGAAGCCCAAGAAGCTTTATCA GTGGCTGTCCTACCAGGAGGTGGCCGACAGGGCTGAATTTCTAGGGTCTGGACTTCTCCA GCACAATTGTAAACCATGTACAGATCAGTTTATTGGTGTTTTTGCACAAAATCGACCGGA GTGGATCATCGCAGAGCTGGCTTGCTACACATACTCTATGGTGGTGGTCCCTCTCTATGA CACCCTGGGCCCTGGGGCAATCCGCTACATCATCAACACAGCCGACATCAGCACCGTGAT TGTGGATAAACCTCAGGAGGCCGCGCTTCTGCTGGAGCATGTGGAGAGGAAGGAGACGCC AGGGCTCAAGCTGATCATCCTCATGGAACCATTCGAGGAAGCTCTGAAAGACAGAGGGCA GGAGTGCGGGGTGGTGGTTAAGTCCATGCAGGCCGTGGAGGACTGTGGCCAGCGGAATCA CCACGTCCCTGTGCCCCCAAAACCCAGTGACCTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTGTATTTTTAAATCTCTGAAAGTGTTGTTTGAGCCTGGCTTCCCGGCGCTGTCCT CAGGAATGTGGGCCCATGTCCCCTGACCAGGGCTTAGGAGTTCGTCCTCTCGCTTCTGGA GAAGATGCAGACTCAGGAGATCCTGAGGATGCTGCGGCTGCCTGAGCTGGGGGACTTGGG CCAGTTTTTCCGCAGCCTCTCAGCCACCACCCTCGTGAGTATGGGTGCGCTGGCCGCCAT CCTCGCCTACTGGTTCACCCACCGGCCTAAGGCCTTGCAGCCGCCGTGCGATCTCCTGAT GCAGTCAGAGGAAGTGGAGGACAGTGGTGGGGCCCGGCGATCCGTGATCGGGGATGGCCC TCAGCTGCTCACCCACTACTATGATGATGCCAGGACCATGTACGAGGTGTTCCGTCGTGG GCTTAGCATCTCAGGGAATGGACCCTGTCTTGGCTTCAGGAAGCCCAAGAAGCTTTATCA GTGGCTGTCCTACCAGGAGGTGGCCGACAGGGCTGAATTTCTAGGGTCTGGACTTCTCCA GCACAATTGTAAACCATGTACAGATCAGTTTATTGGTGTTTTTGCACAAAATCGACCGGA GTGGATCATCGCAGAGCTGGCTTGCTACACATACTCTATGGTGGTGGTCCCTCTCTATGA CACCCTGGGCCCTGGGGCAATCCGCTACATCATCAACACAGCCGACATCAGCACCGTGAT TGTGGATAAACCTCAGGAGGCCGCGCTTCTGCTGGAGCATGTGGAGAGGAAGGAGACGCC AGGGCTCAAGCTGATCATCCTCATGGAACCATTCGAGGAAGCTCTGAAAGACAGAGGGCA GGAGTGCGGGGTGGTGGTTAAGTCCATGCAGGCCGTGGAGGACTGTGGCCAGCGGAATCA CCACGTCCCTGTGCCCCCAAAACCCAGTGACCTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 121-239, - strand, RNAz p=0.609928 | |
| 184-303, + strand, RNAz p=0.671312 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-239, - strand, RNAz p=0.609928 | |
| 184-303, + strand, RNAz p=0.671312 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 121-327, gnl|bosTau2|chr27 (10151099-10150893) | |
| 121-327, gnl|canFam2|chr16 (48718821-48718613) | |
| 121-327, gnl|danRer3|chr1 (13625556-13625763) | |
| 121-327, gnl|dasNov1|scaffold_2481 (16910-17117) | |
| 121-327, gnl|echTel1|scaffold_319155 (41143-40935) | |
| 121-327, gnl|galGal2|chr4 (40053767-40053557) | |
| 121-327, gnl|hg17|chr4 (186099616-186099824) | |
| 121-327, gnl|Hg17|chr4 (186099821-186099615) | |
| 121-327, gnl|loxAfr1|scaffold_1749 (32472-32680) | |
| 121-327, gnl|mm7|chr8 (45270904-45270696) | |
| 121-327, gnl|Mm7|chr8 (45270697-45270901) | |
| 121-327, gnl|monDom2|scaffold_9 (66942661-66942869) | |
| 121-327, gnl|oryCun1|scaffold_186012 (56584-56376) | |
| 121-327, gnl|panTro1|chr3 (204306625-204306833) | |
| 121-327, gnl|rheMac2|chr5 (176901656-176901864) | |
| 121-327, gnl|rn3|chr16 (49081277-49081485) | |
| 121-327, gnl|tetNig1|chr18 (5587567-5587365) | |
| 121-327, gnl|xenTro1|scaffold_99 (1915277-1915481) | |
| 498-610, gnl|bosTau2|chr7 (20611656-20611544) | |
| 498-610, gnl|canFam2|chr11 (23268958-23269078) | |
| 498-610, gnl|danRer3|chr9 (767567-767681) | |
| 498-610, gnl|dasNov1|scaffold_2449 (60044-60165) | |
| 498-610, gnl|echTel1|scaffold_309526 (6610-6723) | |
| 498-610, gnl|fr1|chrUn (86497637-86497742) | |
| 498-610, gnl|galGal2|chr13 (15686982-15687102) | |
| 498-610, gnl|hg17|chr5 (131352982-131353103) | |
| 498-610, gnl|Hg17|chr5 (131353102-131352990) | |
| 498-610, gnl|loxAfr1|scaffold_18530 (62556-62435) | |
| 498-610, gnl|mm7|chr11 (54281942-54281822) | |
| 498-610, gnl|Mm7|chr11 (54281821-54281933) | |
| 498-610, gnl|monDom2|scaffold_6 (94494547-94494437) | |
| 498-610, gnl|oryCun1|scaffold_192455 (3021-2898) | |
| 498-610, gnl|panTro1|chr4 (137685777-137685898) | |
| 498-610, gnl|rheMac2|chr6 (128415461-128415582) | |
| 498-610, gnl|rn3|chr10 (39753055-39752935) | |
| 498-610, gnl|tetNig1|chr7 (8354246-8354353) | |
| 498-610, gnl|xenTro1|scaffold_292 (472431-472313) | |
| 698-881, gnl|bosTau2|chr7 (20610337-20610154) | |
| 698-881, gnl|canFam2|chr11 (23267616-23267821) | |
| 698-881, gnl|danRer3|chr9 (765138-765331) | |
| 698-881, gnl|dasNov1|scaffold_2449 (58721-58926) | |
| 698-881, gnl|echTel1|scaffold_61803 (516-714) | |
| 698-881, gnl|fr1|chrUn (285624333-285624521) | |
| 698-881, gnl|galGal2|chr13 (15686179-15686375) | |
| 698-881, gnl|hg17|chr5 (131351621-131351827) | |
| 698-881, gnl|Hg17|chr5 (131351822-131351639) | |
| 698-881, gnl|loxAfr1|scaffold_18530 (63950-63745) | |
| 698-881, gnl|mm7|chr11 (54284071-54283866) | |
| 698-881, gnl|Mm7|chr11 (54283868-54284051) | |
| 698-881, gnl|monDom2|scaffold_6 (94495541-94495336) | |
| 698-881, gnl|oryCun1|scaffold_192455 (4286-4082) | |
| 698-881, gnl|panTro1|chr4 (137684428-137684634) | |
| 698-881, gnl|rheMac2|chr6 (128414121-128414327) | |
| 698-881, gnl|rn3|chr10 (39754423-39754218) | |
| 698-881, gnl|tetNig1|chr7 (8353657-8353845) | |
| 698-881, gnl|xenTro1|scaffold_292 (473998-473803) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-327, gnl|bosTau2|chr27 (10151099-10150893) | |
| 121-327, gnl|canFam2|chr16 (48718821-48718613) | |
| 121-327, gnl|danRer3|chr1 (13625556-13625763) | |
| 121-327, gnl|dasNov1|scaffold_2481 (16910-17117) | |
| 121-327, gnl|echTel1|scaffold_319155 (41143-40935) | |
| 121-327, gnl|galGal2|chr4 (40053767-40053557) | |
| 121-327, gnl|hg17|chr4 (186099616-186099824) | |
| 121-327, gnl|Hg17|chr4 (186099821-186099615) | |
| 121-327, gnl|loxAfr1|scaffold_1749 (32472-32680) | |
| 121-327, gnl|mm7|chr8 (45270904-45270696) | |
| 121-327, gnl|Mm7|chr8 (45270697-45270901) | |
| 121-327, gnl|monDom2|scaffold_9 (66942661-66942869) | |
| 121-327, gnl|oryCun1|scaffold_186012 (56584-56376) | |
| 121-327, gnl|panTro1|chr3 (204306625-204306833) | |
| 121-327, gnl|rheMac2|chr5 (176901656-176901864) | |
| 121-327, gnl|rn3|chr16 (49081277-49081485) | |
| 121-327, gnl|tetNig1|chr18 (5587567-5587365) | |
| 121-327, gnl|xenTro1|scaffold_99 (1915277-1915481) | |
| 498-610, gnl|bosTau2|chr7 (20611656-20611544) | |
| 498-610, gnl|canFam2|chr11 (23268958-23269078) | |
| 498-610, gnl|danRer3|chr9 (767567-767681) | |
| 498-610, gnl|dasNov1|scaffold_2449 (60044-60165) | |
| 498-610, gnl|echTel1|scaffold_309526 (6610-6723) | |
| 498-610, gnl|fr1|chrUn (86497637-86497742) | |
| 498-610, gnl|galGal2|chr13 (15686982-15687102) | |
| 498-610, gnl|hg17|chr5 (131352982-131353103) | |
| 498-610, gnl|Hg17|chr5 (131353102-131352990) | |
| 498-610, gnl|loxAfr1|scaffold_18530 (62556-62435) | |
| 498-610, gnl|mm7|chr11 (54281942-54281822) | |
| 498-610, gnl|Mm7|chr11 (54281821-54281933) | |
| 498-610, gnl|monDom2|scaffold_6 (94494547-94494437) | |
| 498-610, gnl|oryCun1|scaffold_192455 (3021-2898) | |
| 498-610, gnl|panTro1|chr4 (137685777-137685898) | |
| 498-610, gnl|rheMac2|chr6 (128415461-128415582) | |
| 498-610, gnl|rn3|chr10 (39753055-39752935) | |
| 498-610, gnl|tetNig1|chr7 (8354246-8354353) | |
| 498-610, gnl|xenTro1|scaffold_292 (472431-472313) | |
| 698-881, gnl|bosTau2|chr7 (20610337-20610154) | |
| 698-881, gnl|canFam2|chr11 (23267616-23267821) | |
| 698-881, gnl|danRer3|chr9 (765138-765331) | |
| 698-881, gnl|dasNov1|scaffold_2449 (58721-58926) | |
| 698-881, gnl|echTel1|scaffold_61803 (516-714) | |
| 698-881, gnl|fr1|chrUn (285624333-285624521) | |
| 698-881, gnl|galGal2|chr13 (15686179-15686375) | |
| 698-881, gnl|hg17|chr5 (131351621-131351827) | |
| 698-881, gnl|Hg17|chr5 (131351822-131351639) | |
| 698-881, gnl|loxAfr1|scaffold_18530 (63950-63745) | |
| 698-881, gnl|mm7|chr11 (54284071-54283866) | |
| 698-881, gnl|Mm7|chr11 (54283868-54284051) | |
| 698-881, gnl|monDom2|scaffold_6 (94495541-94495336) | |
| 698-881, gnl|oryCun1|scaffold_192455 (4286-4082) | |
| 698-881, gnl|panTro1|chr4 (137684428-137684634) | |
| 698-881, gnl|rheMac2|chr6 (128414121-128414327) | |
| 698-881, gnl|rn3|chr10 (39754423-39754218) | |
| 698-881, gnl|tetNig1|chr7 (8353657-8353845) | |
| 698-881, gnl|xenTro1|scaffold_292 (473998-473803) |