Ss1.1-Tes1-TES01B100041.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATAAGTCCCGGACACGATGGTGCGTGGAATGACAGTCAGCTCCAAGAAATGGCCCAGCT GAGGATTAAACACCAAGAGGAACTGACTGAGTTGCACAAAAAACGTGGGGAGTTAGCTCA GCTGGTGATTGACCTGAATAACCAGATGCAGTAGAGGGACAAGGAGATGCAGGTGAATGA AGCCAAGATTGCAGAATGCCTGCAGACCATCTCTGACCTGGAGACCGAGTGCCTGGAACT GCGCACCAAGCTTCAGGACCTTGAGAGAGCCAACCAGACCCTGAAGGATGAGTACGACGC CCTGCAGATCACGTTCACTGCCCTGGAGGAGAAGCTGCGGAAGACGACTGAGGAGAACCA GGAGCTGGTCACCAGATGGATGGCCGAGAAAGCCCAGGAAGCCAACCGCCTAAATGCAGA GAATGAAAAGGATTCGAGGCGGCGGCAAGCCCGGCTACAGAAGGAACTCGCAGAAGCAGC AAAGGAACCCCTGCCAGTCGAACAGGATGATGACATTGAAGTCCTTGCAGATGACACCTC CGATCACCCTGAGGAGACCTCTCCCGTGCGAGCCATCAGCAGAGCAGCCACTAAGCGACT CTCGCAGCCTGCTGGAGGCCTTCTGGACTCTATCACTAATATCTTTGGGAGGCGCTCTTT CTCTTCCGTTCCTGCTCCCCAGGATGACGTGGATACCCATCCAGGTTCCAGTAAAGAAGT GAGGGTGCCAGTGACCGCCGTGTGTGTCTTTGACGCTCATGACGGGGAGGTCAATGCTGT GCAGTTCAGTCCGGGCTCCCGGCTGCTGGCCACAGGAGGCATGGATCGGAGGGTGAAGCT CTGGGAGGTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATAAGTCCCGGACACGATGGTGCGTGGAATGACAGTCAGCTCCAAGAAATGGCCCAGCT GAGGATTAAACACCAAGAGGAACTGACTGAGTTGCACAAAAAACGTGGGGAGTTAGCTCA GCTGGTGATTGACCTGAATAACCAGATGCAGTAGAGGGACAAGGAGATGCAGGTGAATGA AGCCAAGATTGCAGAATGCCTGCAGACCATCTCTGACCTGGAGACCGAGTGCCTGGAACT GCGCACCAAGCTTCAGGACCTTGAGAGAGCCAACCAGACCCTGAAGGATGAGTACGACGC CCTGCAGATCACGTTCACTGCCCTGGAGGAGAAGCTGCGGAAGACGACTGAGGAGAACCA GGAGCTGGTCACCAGATGGATGGCCGAGAAAGCCCAGGAAGCCAACCGCCTAAATGCAGA GAATGAAAAGGATTCGAGGCGGCGGCAAGCCCGGCTACAGAAGGAACTCGCAGAAGCAGC AAAGGAACCCCTGCCAGTCGAACAGGATGATGACATTGAAGTCCTTGCAGATGACACCTC CGATCACCCTGAGGAGACCTCTCCCGTGCGAGCCATCAGCAGAGCAGCCACTAAGCGACT CTCGCAGCCTGCTGGAGGCCTTCTGGACTCTATCACTAATATCTTTGGGAGGCGCTCTTT CTCTTCCGTTCCTGCTCCCCAGGATGACGTGGATACCCATCCAGGTTCCAGTAAAGAAGT GAGGGTGCCAGTGACCGCCGTGTGTGTCTTTGACGCTCATGACGGGGAGGTCAATGCTGT GCAGTTCAGTCCGGGCTCCCGGCTGCTGGCCACAGGAGGCATGGATCGGAGGGTGAAGCT CTGGGAGGTGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 5-115, - strand, RNAz p=0.566521 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-115, - strand, RNAz p=0.566521 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 5-115, gnl|bosTau2|chr3 (80683481-80683371) | |
| 5-115, gnl|canFam2|chr25 (47771653-47771816) | |
| 5-115, gnl|danRer3|chrUn (25093284-25093142) | |
| 5-115, gnl|dasNov1|scaffold_7317 (848-695) | |
| 5-115, gnl|fr1|chrUn (311240260-311240140) | |
| 5-115, gnl|galGal2|chr9 (614427-614580) | |
| 5-115, gnl|hg17|chr2 (233953754-233953907) | |
| 5-115, gnl|Hg17|chr2 (233953774-233953884) | |
| 5-115, gnl|loxAfr1|scaffold_1892 (62597-62748) | |
| 5-115, gnl|mm7|chr1 (87666411-87666556) | |
| 5-115, gnl|Mm7|chr1 (87666424-87666534) | |
| 5-115, gnl|monDom2|scaffold_174 (33914-33759) | |
| 5-115, gnl|oryCun1|scaffold_210481 (11389-11241) | |
| 5-115, gnl|panTro1|chr13 (124687970-124688123) | |
| 5-115, gnl|rheMac2|chr12 (97149091-97149244) | |
| 5-115, gnl|rn3|chr9 (86904405-86904559) | |
| 5-115, gnl|tetNig1|chrUn_random (135582886-135583006) | |
| 5-115, gnl|xenTro1|scaffold_382 (381096-380968) | |
| 188-442, gnl|bosTau2|chr3 (80681754-80681500) | |
| 188-442, gnl|Hg17|chr2 (233955539-233955793) | |
| 188-442, gnl|Mm7|chr1 (87667895-87668149) | |
| 752-852, gnl|bosTau2|chr3 (80671355-80671255) | |
| 752-852, gnl|canFam2|chr25 (47785561-47785685) | |
| 752-852, gnl|danRer3|chrUn (25070431-25070332) | |
| 752-852, gnl|dasNov1|scaffold_18335 (13843-13960) | |
| 752-852, gnl|echTel1|scaffold_265561 (974-858) | |
| 752-852, gnl|fr1|chrUn (311236784-311236672) | |
| 752-852, gnl|hg17|chr2 (233968213-233968350) | |
| 752-852, gnl|Hg17|chr2 (233968214-233968314) | |
| 752-852, gnl|loxAfr1|scaffold_1892 (78172-78289) | |
| 752-852, gnl|mm7|chr1 (87680009-87680126) | |
| 752-852, gnl|Mm7|chr1 (87680010-87680110) | |
| 752-852, gnl|monDom2|scaffold_174 (20573-20457) | |
| 752-852, gnl|oryCun1|scaffold_206562 (19770-19654) | |
| 752-852, gnl|panTro1|chr13 (124702438-124702575) | |
| 752-852, gnl|rheMac2|chr12 (97163666-97163803) | |
| 752-852, gnl|rn3|chr9 (86917359-86917476) | |
| 752-852, gnl|tetNig1|chrUn_random (135584922-135585065) | |
| 752-852, gnl|xenTro1|scaffold_382 (369435-369322) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-115, gnl|bosTau2|chr3 (80683481-80683371) | |
| 5-115, gnl|canFam2|chr25 (47771653-47771816) | |
| 5-115, gnl|danRer3|chrUn (25093284-25093142) | |
| 5-115, gnl|dasNov1|scaffold_7317 (848-695) | |
| 5-115, gnl|fr1|chrUn (311240260-311240140) | |
| 5-115, gnl|galGal2|chr9 (614427-614580) | |
| 5-115, gnl|hg17|chr2 (233953754-233953907) | |
| 5-115, gnl|Hg17|chr2 (233953774-233953884) | |
| 5-115, gnl|loxAfr1|scaffold_1892 (62597-62748) | |
| 5-115, gnl|mm7|chr1 (87666411-87666556) | |
| 5-115, gnl|Mm7|chr1 (87666424-87666534) | |
| 5-115, gnl|monDom2|scaffold_174 (33914-33759) | |
| 5-115, gnl|oryCun1|scaffold_210481 (11389-11241) | |
| 5-115, gnl|panTro1|chr13 (124687970-124688123) | |
| 5-115, gnl|rheMac2|chr12 (97149091-97149244) | |
| 5-115, gnl|rn3|chr9 (86904405-86904559) | |
| 5-115, gnl|tetNig1|chrUn_random (135582886-135583006) | |
| 5-115, gnl|xenTro1|scaffold_382 (381096-380968) | |
| 188-442, gnl|bosTau2|chr3 (80681754-80681500) | |
| 188-442, gnl|Hg17|chr2 (233955539-233955793) | |
| 188-442, gnl|Mm7|chr1 (87667895-87668149) | |
| 752-852, gnl|bosTau2|chr3 (80671355-80671255) | |
| 752-852, gnl|canFam2|chr25 (47785561-47785685) | |
| 752-852, gnl|danRer3|chrUn (25070431-25070332) | |
| 752-852, gnl|dasNov1|scaffold_18335 (13843-13960) | |
| 752-852, gnl|echTel1|scaffold_265561 (974-858) | |
| 752-852, gnl|fr1|chrUn (311236784-311236672) | |
| 752-852, gnl|hg17|chr2 (233968213-233968350) | |
| 752-852, gnl|Hg17|chr2 (233968214-233968314) | |
| 752-852, gnl|loxAfr1|scaffold_1892 (78172-78289) | |
| 752-852, gnl|mm7|chr1 (87680009-87680126) | |
| 752-852, gnl|Mm7|chr1 (87680010-87680110) | |
| 752-852, gnl|monDom2|scaffold_174 (20573-20457) | |
| 752-852, gnl|oryCun1|scaffold_206562 (19770-19654) | |
| 752-852, gnl|panTro1|chr13 (124702438-124702575) | |
| 752-852, gnl|rheMac2|chr12 (97163666-97163803) | |
| 752-852, gnl|rn3|chr9 (86917359-86917476) | |
| 752-852, gnl|tetNig1|chrUn_random (135584922-135585065) | |
| 752-852, gnl|xenTro1|scaffold_382 (369435-369322) |