Non-Coding RNA Search

Ss1.1-Tes1-TES01B120109.5

Sequence:


               
               CAGTTGAGGATGGCTGGAGCCGAGGGGACCGCGGGGCGGCAGTCGGAGCTGGAGCCCGTG
GTATCGTCGGTCGATGTACTTGAGGAGGACGAGGAGCTGGAGAATGAGGCGTGCGCCGTA
CTAGGCGGCAGCGACTCCGAGAAGTGCTCCTACTCGCAGGGCTCAGTAAAGAGACAAGCA
CTGTATGCCTGTAGTACTTGCACCCCAGAGGGAGAAGAACCAGCAGGAATTTGCCTAGCT
TGCAGTTATGAATGTCATGGAAGTCATAAACTATTTGAGCTATACACAAAAAGAAATTTT
CGTTGTGATTGTGGTAACAGCAAGTTTAAAAATTTGGAATGCAAATTATTTCCTGATAAA
GCAAAGATAAATTCTAGCAATAAGTACAATGACAACTTTTTTGGATTGTACTGCATTTGC
AAGAGACCTTATCCTGATCCTGAGGATGAGATTCCCGATGAGATGATCCAGTGTGTAGTC
TGTGAAGACTGGTTCCATGGAAGGCATCTTGGTGCCGCCCCCCCTGAGAGCGGGGACTTC
CAGGAGATGGTGTGCCAGGCTTGCATGAAACGCTGTTCATTCTTGTGGGCTTATGCTGCG
CAGCTGGCCGTAACCAAAGGAACTGCGGAAGAGGATGGGTTGGTACTGAATGTTGATGGA
GTAGGAGATCAGGAAGCTCTCCAGCCTGAAAACGGGGCTCATCAAGATGGTGCCCCTAAA
GAGGATGTTTCGGAACATGGACAGGCGGCTGTGAGGGCAGTGAAAGCAGAGCCGACGAAC
GAACCGTGCACCAGCTCTAGTTCTGAATCTGACCTCCAGACAGCATTTAAGAACCAACAT
CTCAACACAGAATCACAGTCTGGCTGCAAACTTCAGGCGTTTAAAGCTAAGCAGTTTATA
AAGAAAGACACTGCCACCTATTGGCCCGTGAACTGGCGTAGCAAGTTGTGTACCTGCAAG
GACTGTATGAAAATGTATGGCGACCTAGATGTCCTGTTCCTGACAGATGAATATGACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTGAGGATGGCTGGAGCCGAGGGGACCGCGGGGCGGCAGTCGGAGCTGGAGCCCGTG
GTATCGTCGGTCGATGTACTTGAGGAGGACGAGGAGCTGGAGAATGAGGCGTGCGCCGTA
CTAGGCGGCAGCGACTCCGAGAAGTGCTCCTACTCGCAGGGCTCAGTAAAGAGACAAGCA
CTGTATGCCTGTAGTACTTGCACCCCAGAGGGAGAAGAACCAGCAGGAATTTGCCTAGCT
TGCAGTTATGAATGTCATGGAAGTCATAAACTATTTGAGCTATACACAAAAAGAAATTTT
CGTTGTGATTGTGGTAACAGCAAGTTTAAAAATTTGGAATGCAAATTATTTCCTGATAAA
GCAAAGATAAATTCTAGCAATAAGTACAATGACAACTTTTTTGGATTGTACTGCATTTGC
AAGAGACCTTATCCTGATCCTGAGGATGAGATTCCCGATGAGATGATCCAGTGTGTAGTC
TGTGAAGACTGGTTCCATGGAAGGCATCTTGGTGCCGCCCCCCCTGAGAGCGGGGACTTC
CAGGAGATGGTGTGCCAGGCTTGCATGAAACGCTGTTCATTCTTGTGGGCTTATGCTGCG
CAGCTGGCCGTAACCAAAGGAACTGCGGAAGAGGATGGGTTGGTACTGAATGTTGATGGA
GTAGGAGATCAGGAAGCTCTCCAGCCTGAAAACGGGGCTCATCAAGATGGTGCCCCTAAA
GAGGATGTTTCGGAACATGGACAGGCGGCTGTGAGGGCAGTGAAAGCAGAGCCGACGAAC
GAACCGTGCACCAGCTCTAGTTCTGAATCTGACCTCCAGACAGCATTTAAGAACCAACAT
CTCAACACAGAATCACAGTCTGGCTGCAAACTTCAGGCGTTTAAAGCTAAGCAGTTTATA
AAGAAAGACACTGCCACCTATTGGCCCGTGAACTGGCGTAGCAAGTTGTGTACCTGCAAG
GACTGTATGAAAATGTATGGCGACCTAGATGTCCTGTTCCTGACAGATGAATATGACACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RCC3_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RCC3_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               334-450, + strand, RNAz p=0.988254

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               334-450, + strand, RNAz p=0.988254

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC015046, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC015046, +

Aligned organism(s): 23 entry(ies)

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Aligned organism(s): 23 entry(ies)

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               1-160, gnl|bosTau2|chr21 (38638559-38638400)
               

               
               1-160, gnl|Hg17|chr14 (92743381-92743540)
               

               
               1-160, gnl|Mm7|chr12 (100253314-100253473)
               


               
               334-450, gnl|bosTau2|chr21 (38634860-38634745)
               

               
               334-450, gnl|Hg17|chr14 (92748108-92748226)
               

               
               334-450, gnl|Mm7|chr12 (100258731-100258847)
               


               
               504-608, gnl|bosTau2|chr21 (38633259-38633155)
               

               
               504-608, gnl|Hg17|chr14 (92751274-92751378)
               

               
               504-608, gnl|Mm7|chr12 (100261539-100261643)
               


               
               610-819, gnl|bosTau2|chr21 (38631210-38631001)
               

               
               610-819, gnl|canFam2|chr8 (65459028-65459249)
               

               
               610-819, gnl|dasNov1|scaffold_91861 (3806-3995)
               

               
               610-819, gnl|echTel1|scaffold_305270 (11752-11970)
               

               
               610-819, gnl|galGal2|chr5 (41872396-41872584)
               

               
               610-819, gnl|hg17|chr14 (92754624-92754845)
               

               
               610-819, gnl|Hg17|chr14 (92754625-92754834)
               

               
               610-819, gnl|loxAfr1|scaffold_118762 (4689-4910)
               

               
               610-819, gnl|mm7|chr12 (100263362-100263583)
               

               
               610-819, gnl|Mm7|chr12 (100263363-100263572)
               

               
               610-819, gnl|monDom2|scaffold_8 (31605580-31605798)
               

               
               610-819, gnl|panTro1|chr15 (93173340-93173561)
               

               
               610-819, gnl|rheMac2|chr7 (156421535-156421756)
               

               
               610-819, gnl|rn3|chr6 (127045790-127046011)

Aligned organism(s): 23 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-160, gnl|bosTau2|chr21 (38638559-38638400)
               

               
               1-160, gnl|Hg17|chr14 (92743381-92743540)
               

               
               1-160, gnl|Mm7|chr12 (100253314-100253473)
               


               
               334-450, gnl|bosTau2|chr21 (38634860-38634745)
               

               
               334-450, gnl|Hg17|chr14 (92748108-92748226)
               

               
               334-450, gnl|Mm7|chr12 (100258731-100258847)
               


               
               504-608, gnl|bosTau2|chr21 (38633259-38633155)
               

               
               504-608, gnl|Hg17|chr14 (92751274-92751378)
               

               
               504-608, gnl|Mm7|chr12 (100261539-100261643)
               


               
               610-819, gnl|bosTau2|chr21 (38631210-38631001)
               

               
               610-819, gnl|canFam2|chr8 (65459028-65459249)
               

               
               610-819, gnl|dasNov1|scaffold_91861 (3806-3995)
               

               
               610-819, gnl|echTel1|scaffold_305270 (11752-11970)
               

               
               610-819, gnl|galGal2|chr5 (41872396-41872584)
               

               
               610-819, gnl|hg17|chr14 (92754624-92754845)
               

               
               610-819, gnl|Hg17|chr14 (92754625-92754834)
               

               
               610-819, gnl|loxAfr1|scaffold_118762 (4689-4910)
               

               
               610-819, gnl|mm7|chr12 (100263362-100263583)
               

               
               610-819, gnl|Mm7|chr12 (100263363-100263572)
               

               
               610-819, gnl|monDom2|scaffold_8 (31605580-31605798)
               

               
               610-819, gnl|panTro1|chr15 (93173340-93173561)
               

               
               610-819, gnl|rheMac2|chr7 (156421535-156421756)
               

               
               610-819, gnl|rn3|chr6 (127045790-127046011)

	1-160, gnl\|bosTau2\|chr21 (38638559-38638400)
	1-160, gnl\|Hg17\|chr14 (92743381-92743540)
	1-160, gnl\|Mm7\|chr12 (100253314-100253473)

	334-450, gnl\|bosTau2\|chr21 (38634860-38634745)
	334-450, gnl\|Hg17\|chr14 (92748108-92748226)
	334-450, gnl\|Mm7\|chr12 (100258731-100258847)

	504-608, gnl\|bosTau2\|chr21 (38633259-38633155)
	504-608, gnl\|Hg17\|chr14 (92751274-92751378)
	504-608, gnl\|Mm7\|chr12 (100261539-100261643)

	610-819, gnl\|bosTau2\|chr21 (38631210-38631001)
	610-819, gnl\|canFam2\|chr8 (65459028-65459249)
	610-819, gnl\|dasNov1\|scaffold_91861 (3806-3995)
	610-819, gnl\|echTel1\|scaffold_305270 (11752-11970)
	610-819, gnl\|galGal2\|chr5 (41872396-41872584)
	610-819, gnl\|hg17\|chr14 (92754624-92754845)
	610-819, gnl\|Hg17\|chr14 (92754625-92754834)
	610-819, gnl\|loxAfr1\|scaffold_118762 (4689-4910)
	610-819, gnl\|mm7\|chr12 (100263362-100263583)
	610-819, gnl\|Mm7\|chr12 (100263363-100263572)
	610-819, gnl\|monDom2\|scaffold_8 (31605580-31605798)
	610-819, gnl\|panTro1\|chr15 (93173340-93173561)
	610-819, gnl\|rheMac2\|chr7 (156421535-156421756)
	610-819, gnl\|rn3\|chr6 (127045790-127046011)