Non-Coding RNA Search

Ss1.1-Tes1-TES01C040004.5

Sequence:


               
               GCGGGATAGTGGGCGGAGGAATCTGGGAGGGAAATTCGTGTAGGAGGTTGGCAATCCCGG
CGTGGCGGAGGAGCTTGGGCGTGTAGCGCGACCTTGGGCTGCAAAAAGGCCTTGAAGACC
TCGGCTTGGTAAAGAGAACCCTGAGCTCGGGTTTGCTTCAGGCCGCGGAGACCCGGTACC
AAGGTCGCTCTTGTATTGGGCCGGACCGTGGCCGGGAGAACGAGCGCCCCCTCGGGTCGA
GGTGCCGGCGGGCTGACTCGGAGCCGGAGCGGATGCAGCATTGGGGCTAGGAGTGGTATA
GGGTTCCTCTCTCACACCTCTGTCTGCGGCTGGAATTTGAGCCTTGGCCCTGGCTCTCCT
CCCCGGAAGTTTTGTTTGAGGTGAGGGCACAGAGTGTAAACAACCCTTTGGACTCTCTGT
CCCTGAGGTTGGTCCCAGTCTAGCCAGCTGCTCATTGCCTGAGCGCAGCTTCAGGAGCCC
TCTCACTTCCCCTTCCAGTCCTTTCCCTGCCCTCTCACCGGGCCACTTCTAAGTTTTAGT
TAATAGGGATCAAGATGTCAGGCCTCTTCTCAAAGGGGTTGGGTTGCACAGGATGTTCAG
ATTTTGCAAAACCAAAGCAGTGAATCTCTAGGGGAGGAATTTCTGACCAGTGGGGAGATA
ACTTAGGAGTAAGGAGAAGGAGCATATCATAAAGTGGGATTAGATGGGATTTCTGCAGAA
CCAGAGGCCCTCTTAAGAGGCCCTGAACGTTAGGATACAGATATAGCCAATTTGGCTTCA
GGGCTTTGTGACTGTGAGCTTGGAATGACTCAAAGCTCAGAGAGGTTAGATCATAGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGATAGTGGGCGGAGGAATCTGGGAGGGAAATTCGTGTAGGAGGTTGGCAATCCCGG
CGTGGCGGAGGAGCTTGGGCGTGTAGCGCGACCTTGGGCTGCAAAAAGGCCTTGAAGACC
TCGGCTTGGTAAAGAGAACCCTGAGCTCGGGTTTGCTTCAGGCCGCGGAGACCCGGTACC
AAGGTCGCTCTTGTATTGGGCCGGACCGTGGCCGGGAGAACGAGCGCCCCCTCGGGTCGA
GGTGCCGGCGGGCTGACTCGGAGCCGGAGCGGATGCAGCATTGGGGCTAGGAGTGGTATA
GGGTTCCTCTCTCACACCTCTGTCTGCGGCTGGAATTTGAGCCTTGGCCCTGGCTCTCCT
CCCCGGAAGTTTTGTTTGAGGTGAGGGCACAGAGTGTAAACAACCCTTTGGACTCTCTGT
CCCTGAGGTTGGTCCCAGTCTAGCCAGCTGCTCATTGCCTGAGCGCAGCTTCAGGAGCCC
TCTCACTTCCCCTTCCAGTCCTTTCCCTGCCCTCTCACCGGGCCACTTCTAAGTTTTAGT
TAATAGGGATCAAGATGTCAGGCCTCTTCTCAAAGGGGTTGGGTTGCACAGGATGTTCAG
ATTTTGCAAAACCAAAGCAGTGAATCTCTAGGGGAGGAATTTCTGACCAGTGGGGAGATA
ACTTAGGAGTAAGGAGAAGGAGCATATCATAAAGTGGGATTAGATGGGATTTCTGCAGAA
CCAGAGGCCCTCTTAAGAGGCCCTGAACGTTAGGATACAGATATAGCCAATTTGGCTTCA
GGGCTTTGTGACTGTGAGCTTGGAATGACTCAAAGCTCAGAGAGGTTAGATCATAGGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               298-411, + strand, RNAz p=0.653252

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-411, + strand, RNAz p=0.653252

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-839, gnl|bosTau2|chr15 (49049664-49048819)
               

               
               3-839, gnl|Hg17|chr11 (47227045-47227859)
               

               
               3-839, gnl|Mm7|chr2 (91053519-91052725)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-839, gnl|bosTau2|chr15 (49049664-49048819)
               

               
               3-839, gnl|Hg17|chr11 (47227045-47227859)
               

               
               3-839, gnl|Mm7|chr2 (91053519-91052725)

	3-839, gnl\|bosTau2\|chr15 (49049664-49048819)
	3-839, gnl\|Hg17\|chr11 (47227045-47227859)
	3-839, gnl\|Mm7\|chr2 (91053519-91052725)