Ss1.1-Tes1-TES01C120075.5
|
GGCGGAATCTGCAGCTCCTGACCGAGGAGGGTCCGCTGGGGCTGCCCCCCGACCTGCGCA
GCAAGGCGCTGGAGCTCACCACCACCACCATGGAGCTGAACGCGCTCAGGCTCTGGTGCC
TGTGCCATAAGTATGTCCTCCACACACTTCCCTCTCGCCTCCGACAAGCCGTGATCAACC
ATCTCCAAGACACGCAAGAAACCGAGGCTGCCTACGAGGCCCAGAACCTCTACCTCTTTC
TAGAAAACATTGACCACCTGCAGAACGTGCAGCTGCAGGCCTGGACAAACAAGCAGAAGG
ACCTGGAGGAGAAGCGCCAGGAGTGCCTGAGCAGCATGGTGACCACGTTCCCCAAGCTCC
AGCTTGAGTGGAGCATTAACCTGCACACCCCTGTGGTCACCTCTGCAAAGTCAAAGAAAA
GCAAGCCTCCACAGTCCTTGCTCCGGCACATGCGCTTCAGCAGCTCCTCCTGCAAGCCCT
GGGAGCTCTTTACAACAAAGCACCTTCAATGTGTGCCCCTGCACATGGCCCGCCAACAGG
ATAACCAGATGGAGGCCATCTGGAAAACCGATGTGGCCTCGTCCAGTCACCCAGTAGAAA
GGAAGACCCCCATCCACCTGTCCTGGGACCAGCTGGGGGGCTACCCAGATACTCCCCGGC
TGTTGGCATTGGACGTGCACTCCTCCTACTGCAAAAGCTTGATGTCCCTCAAGGCCCGGG
CCCCAGTCACTCAAAGAAAGGAATGCCCGCAACCCCCAGAGGAGTCAGCTGAGCTTGTTC
GTAAAAAGTCAAACAAGTCCTTCCCTGGAGCCCTAAGAAGCCAGAAGGCTCCAGGCAGTC
CCAGTCCTGACCCCACGCCTTAGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCGGAATCTGCAGCTCCTGACCGAGGAGGGTCCGCTGGGGCTGCCCCCCGACCTGCGCA
GCAAGGCGCTGGAGCTCACCACCACCACCATGGAGCTGAACGCGCTCAGGCTCTGGTGCC
TGTGCCATAAGTATGTCCTCCACACACTTCCCTCTCGCCTCCGACAAGCCGTGATCAACC
ATCTCCAAGACACGCAAGAAACCGAGGCTGCCTACGAGGCCCAGAACCTCTACCTCTTTC
TAGAAAACATTGACCACCTGCAGAACGTGCAGCTGCAGGCCTGGACAAACAAGCAGAAGG
ACCTGGAGGAGAAGCGCCAGGAGTGCCTGAGCAGCATGGTGACCACGTTCCCCAAGCTCC
AGCTTGAGTGGAGCATTAACCTGCACACCCCTGTGGTCACCTCTGCAAAGTCAAAGAAAA
GCAAGCCTCCACAGTCCTTGCTCCGGCACATGCGCTTCAGCAGCTCCTCCTGCAAGCCCT
GGGAGCTCTTTACAACAAAGCACCTTCAATGTGTGCCCCTGCACATGGCCCGCCAACAGG
ATAACCAGATGGAGGCCATCTGGAAAACCGATGTGGCCTCGTCCAGTCACCCAGTAGAAA
GGAAGACCCCCATCCACCTGTCCTGGGACCAGCTGGGGGGCTACCCAGATACTCCCCGGC
TGTTGGCATTGGACGTGCACTCCTCCTACTGCAAAAGCTTGATGTCCCTCAAGGCCCGGG
CCCCAGTCACTCAAAGAAAGGAATGCCCGCAACCCCCAGAGGAGTCAGCTGAGCTTGTTC
GTAAAAAGTCAAACAAGTCCTTCCCTGGAGCCCTAAGAAGCCAGAAGGCTCCAGGCAGTC
CCAGTCCTGACCCCACGCCTTAGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
145-356, gnl|bosTau2|chr5 (21790006-21790217) |
|
145-356, gnl|canFam2|chr27 (8064544-8064333) |
|
145-356, gnl|dasNov1|scaffold_55027 (5004-5216) |
|
145-356, gnl|echTel1|scaffold_294118 (3017-3229) |
|
145-356, gnl|hg17|chr12 (48278804-48279016) |
|
145-356, gnl|Hg17|chr12 (48279017-48278805) |
|
145-356, gnl|loxAfr1|scaffold_3183 (52725-52493) |
|
145-356, gnl|mm7|chr15 (99263933-99264144) |
|
145-356, gnl|Mm7|chr15 (99264145-99263934) |
|
145-356, gnl|oryCun1|scaffold_188624 (16296-16509) |
|
145-356, gnl|panTro1|chr10 (49461249-49461461) |
|
145-356, gnl|rheMac2|chr11 (46741122-46741334) |
|
145-356, gnl|rn3|chr7 (138111205-138111415) |
| |
|
518-719, gnl|bosTau2|chr5 (21793025-21793225) |
|
518-719, gnl|Hg17|chr12 (48267818-48267616) |
|
518-719, gnl|Mm7|chr15 (99259135-99258934) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
145-356, gnl|bosTau2|chr5 (21790006-21790217) |
|
145-356, gnl|canFam2|chr27 (8064544-8064333) |
|
145-356, gnl|dasNov1|scaffold_55027 (5004-5216) |
|
145-356, gnl|echTel1|scaffold_294118 (3017-3229) |
|
145-356, gnl|hg17|chr12 (48278804-48279016) |
|
145-356, gnl|Hg17|chr12 (48279017-48278805) |
|
145-356, gnl|loxAfr1|scaffold_3183 (52725-52493) |
|
145-356, gnl|mm7|chr15 (99263933-99264144) |
|
145-356, gnl|Mm7|chr15 (99264145-99263934) |
|
145-356, gnl|oryCun1|scaffold_188624 (16296-16509) |
|
145-356, gnl|panTro1|chr10 (49461249-49461461) |
|
145-356, gnl|rheMac2|chr11 (46741122-46741334) |
|
145-356, gnl|rn3|chr7 (138111205-138111415) |
| |
|
518-719, gnl|bosTau2|chr5 (21793025-21793225) |
|
518-719, gnl|Hg17|chr12 (48267818-48267616) |
|
518-719, gnl|Mm7|chr15 (99259135-99258934) |
