Non-Coding RNA Search

Ss1.1-Tes1-TES01C120112.5

Sequence:


               
               CCCCCCAACCCCAGGACATCCGCAACCAGCGCAGGCACCGGCAGCGGCGGAAAGCAGAGC
TGGTGAAGCTCCAGGCCACGTTCCAGGGCCTGAGCGCTAAGACCACCTTTTACGAGGAGC
AGGGCGACTACTACAGCCAGTACATCCGAGCCTGCCTGGACCACTTGGCCCCCAGCTCCA
AGAGTTCTGGAAAAGGAAAGAAGCAGCCATCACTCCATTACACAGCTGCCCAGCTCCTGG
AGAAGGGTGTCCTGGTGGAAATTGAAGATCTTCCCACCTCTCAGTATGTGTCTTTGGCGG
GCAGAACGTCAGCCCCTTCCCAGGCCCCAACCTGGGGGTCGGACTCGGCTGAGCACCGAG
CAGGAGGGAAGGGGTTTCAGCTTCAGTATCAGGACCTCCTGCAGCTCCAGTACGAGGGTG
TGGCTGTCATGAAACTCTTCAATAAGGCCAAGGTCAATGTCAACCTTCTCATCTTCCTCC
TCAACAAGAAATTCTTGCGGAAGTGACCGAGGCAGTGGGTGCTATGCAAGCCCTTCTTAC
CTCGCTGGATGCTTTTCTCAACACTAGTGCACTGCTCCACGCCCCTGCTGACACCCAGAG
CTCGGGACTAGGCAGAGCTCAAGGGGGTCTCACCCTTTCCCTGACTGGGAGGAGTTTGTC
TGCCAGCACCGGGCCACAGGCAGAGCCTCTAACTGGGCTAAAGTGAGCCTTGCCTTGGAG
TCTGGCTGTATGGCTTTTGAGTCTGAGAACTGCACCAGCCAGGTGGTAGGGAACGAACCT
CGGGCCTGCCCTTTGGCCTACGAAGGCTACTGCTCTTGTGTCTGCTGCTGCCTTCTCAAT
ATTTATAAGCACTGCCCCAGTGAGTGGCCTGATACCCCCCCTGCCTCCCTTCTCTCTGCA
GACCCCATAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCAACCCCAGGACATCCGCAACCAGCGCAGGCACCGGCAGCGGCGGAAAGCAGAGC
TGGTGAAGCTCCAGGCCACGTTCCAGGGCCTGAGCGCTAAGACCACCTTTTACGAGGAGC
AGGGCGACTACTACAGCCAGTACATCCGAGCCTGCCTGGACCACTTGGCCCCCAGCTCCA
AGAGTTCTGGAAAAGGAAAGAAGCAGCCATCACTCCATTACACAGCTGCCCAGCTCCTGG
AGAAGGGTGTCCTGGTGGAAATTGAAGATCTTCCCACCTCTCAGTATGTGTCTTTGGCGG
GCAGAACGTCAGCCCCTTCCCAGGCCCCAACCTGGGGGTCGGACTCGGCTGAGCACCGAG
CAGGAGGGAAGGGGTTTCAGCTTCAGTATCAGGACCTCCTGCAGCTCCAGTACGAGGGTG
TGGCTGTCATGAAACTCTTCAATAAGGCCAAGGTCAATGTCAACCTTCTCATCTTCCTCC
TCAACAAGAAATTCTTGCGGAAGTGACCGAGGCAGTGGGTGCTATGCAAGCCCTTCTTAC
CTCGCTGGATGCTTTTCTCAACACTAGTGCACTGCTCCACGCCCCTGCTGACACCCAGAG
CTCGGGACTAGGCAGAGCTCAAGGGGGTCTCACCCTTTCCCTGACTGGGAGGAGTTTGTC
TGCCAGCACCGGGCCACAGGCAGAGCCTCTAACTGGGCTAAAGTGAGCCTTGCCTTGGAG
TCTGGCTGTATGGCTTTTGAGTCTGAGAACTGCACCAGCCAGGTGGTAGGGAACGAACCT
CGGGCCTGCCCTTTGGCCTACGAAGGCTACTGCTCTTGTGTCTGCTGCTGCCTTCTCAAT
ATTTATAAGCACTGCCCCAGTGAGTGGCCTGATACCCCCCCTGCCTCCCTTCTCTCTGCA
GACCCCATAGCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-92, - strand, RNAz p=0.918847
               

               
               64-182, - strand, RNAz p=0.684751

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-92, - strand, RNAz p=0.918847
               

               
               64-182, - strand, RNAz p=0.684751

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-182, gnl|bosTau2|chr3 (10859532-10859351)
               

               
               1-182, gnl|canFam2|chr7 (44386798-44386618)
               

               
               1-182, gnl|danRer3|chr15 (4510012-4509854)
               

               
               1-182, gnl|dasNov1|scaffold_6795 (4481-4660)
               

               
               1-182, gnl|echTel1|scaffold_294341 (72545-72385)
               

               
               1-182, gnl|fr1|chrUn (24080009-24079831)
               

               
               1-182, gnl|hg17|chr1 (153311773-153311954)
               

               
               1-182, gnl|Hg17|chr1 (153311960-153311780)
               

               
               1-182, gnl|loxAfr1|scaffold_14597 (25776-25957)
               

               
               1-182, gnl|mm7|chr3 (88230757-88230576)
               

               
               1-182, gnl|Mm7|chr3 (88230567-88230748)
               

               
               1-182, gnl|monDom2|scaffold_59 (907228-907020)
               

               
               1-182, gnl|oryCun1|scaffold_202401 (94051-94231)
               

               
               1-182, gnl|panTro1|chr1 (135274432-135274613)
               

               
               1-182, gnl|rheMac2|chr1 (135137905-135138086)
               

               
               1-182, gnl|rn3|chr2 (180144351-180144170)
               

               
               1-182, gnl|tetNig1|chrUn_random (6793486-6793308)
               

               
               1-182, gnl|xenTro1|scaffold_433 (369775-369950)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr3 (10859532-10859351)
               

               
               1-182, gnl|canFam2|chr7 (44386798-44386618)
               

               
               1-182, gnl|danRer3|chr15 (4510012-4509854)
               

               
               1-182, gnl|dasNov1|scaffold_6795 (4481-4660)
               

               
               1-182, gnl|echTel1|scaffold_294341 (72545-72385)
               

               
               1-182, gnl|fr1|chrUn (24080009-24079831)
               

               
               1-182, gnl|hg17|chr1 (153311773-153311954)
               

               
               1-182, gnl|Hg17|chr1 (153311960-153311780)
               

               
               1-182, gnl|loxAfr1|scaffold_14597 (25776-25957)
               

               
               1-182, gnl|mm7|chr3 (88230757-88230576)
               

               
               1-182, gnl|Mm7|chr3 (88230567-88230748)
               

               
               1-182, gnl|monDom2|scaffold_59 (907228-907020)
               

               
               1-182, gnl|oryCun1|scaffold_202401 (94051-94231)
               

               
               1-182, gnl|panTro1|chr1 (135274432-135274613)
               

               
               1-182, gnl|rheMac2|chr1 (135137905-135138086)
               

               
               1-182, gnl|rn3|chr2 (180144351-180144170)
               

               
               1-182, gnl|tetNig1|chrUn_random (6793486-6793308)
               

               
               1-182, gnl|xenTro1|scaffold_433 (369775-369950)

	1-92, - strand, RNAz p=0.918847
	64-182, - strand, RNAz p=0.684751

	1-182, gnl\|bosTau2\|chr3 (10859532-10859351)
	1-182, gnl\|canFam2\|chr7 (44386798-44386618)
	1-182, gnl\|danRer3\|chr15 (4510012-4509854)
	1-182, gnl\|dasNov1\|scaffold_6795 (4481-4660)
	1-182, gnl\|echTel1\|scaffold_294341 (72545-72385)
	1-182, gnl\|fr1\|chrUn (24080009-24079831)
	1-182, gnl\|hg17\|chr1 (153311773-153311954)
	1-182, gnl\|Hg17\|chr1 (153311960-153311780)
	1-182, gnl\|loxAfr1\|scaffold_14597 (25776-25957)
	1-182, gnl\|mm7\|chr3 (88230757-88230576)
	1-182, gnl\|Mm7\|chr3 (88230567-88230748)
	1-182, gnl\|monDom2\|scaffold_59 (907228-907020)
	1-182, gnl\|oryCun1\|scaffold_202401 (94051-94231)
	1-182, gnl\|panTro1\|chr1 (135274432-135274613)
	1-182, gnl\|rheMac2\|chr1 (135137905-135138086)
	1-182, gnl\|rn3\|chr2 (180144351-180144170)
	1-182, gnl\|tetNig1\|chrUn_random (6793486-6793308)
	1-182, gnl\|xenTro1\|scaffold_433 (369775-369950)