Non-Coding RNA Search

Ss1.1-Tes1-TES01D040049.5

Sequence:


               
               TAACCAGAAATCAAGAATGAAGGCCTGGGTCAAATAGCTTGTCCAGAAAATCACATTACG
CTAAGCCCAGCAACAACTGGTCTGTTCTAAAAAGCATAGCCTTACATCATTCATGGCTTC
ATACTTCTGCAGATGTTTATCGTAGTCTTCCCAGCAAAATCGGGCTAATGGGTTCCTATG
TTTGCAAATCAAGGTTCGGCAACTTAGAAATCAGGACCTGCCTTTAGGGACAAATAAACC
TATTAAAAACCACTGAGGATTCTGGAGTGACATTCATTAACTACCAGAACGATTACATTT
GTCCTTGGTGGTAACTGTGTCCACAGGAGGCTTAATGGATGAAATTGGTAGACGAGGGTC
TGCCCCTTGCATTGATCTTATTCAGAGTGCGGACCCACAGGAGAAGAACTAAGGGCACAG
GGGAGGATGTGCACAAATCTCTGAGCACCTTGAGAAGTGAAGATTGTCAACAGAATATTT
TGTTTAGGTCAAAGTCATCCTTTCATGGAACAGCAGTTTGCTAGCCAGAAGAACTCAGTT
AAGAGTGGAAAGCCTGCTGACGTAGGACAGGGAATTCTGACAGTAAATCACCTTTCCTGG
AATAGATAGGCTTTCTGGTAACTAGTGCTTAATTGTGCCAAGCACTGTTGCAAATTCTCG
TTATAATTCTCATTGAATAAATGAGAAAACCAAGGCTGAGAAATAATTGTGGTCAAAAGT
CACACAGCAAGGAACTGGCAGAGCTGGATCCAGAGCCAACCTTTCTCCAGCACCAGGGCC
TTAGAACTTGGCTGTTCTGTTCCAGCTCAGAAGGCAGCTGCCAGAATCTTTGTAAGACAT
CTATTGTACAAGGCAGGTGGTCCCAAGCCTGCCATTGGTAGCTCTCCAACTGAGAAGAGT
TGCCTTTGTTCTGTGGTCACGGCAGGGGCACCAGAGGTTGCCCTCCCAGTCACCAAAACT
TGGGCCCTGCCTCCATTCCAGAACTCATATGATTCCTGTGCCTGGAGAAATGAAAATAGT
TCATTTTTAAAAGCCTTTTAACAGATTTCCCACTTCCATCCCTCAAGAGGTGATTGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACCAGAAATCAAGAATGAAGGCCTGGGTCAAATAGCTTGTCCAGAAAATCACATTACG
CTAAGCCCAGCAACAACTGGTCTGTTCTAAAAAGCATAGCCTTACATCATTCATGGCTTC
ATACTTCTGCAGATGTTTATCGTAGTCTTCCCAGCAAAATCGGGCTAATGGGTTCCTATG
TTTGCAAATCAAGGTTCGGCAACTTAGAAATCAGGACCTGCCTTTAGGGACAAATAAACC
TATTAAAAACCACTGAGGATTCTGGAGTGACATTCATTAACTACCAGAACGATTACATTT
GTCCTTGGTGGTAACTGTGTCCACAGGAGGCTTAATGGATGAAATTGGTAGACGAGGGTC
TGCCCCTTGCATTGATCTTATTCAGAGTGCGGACCCACAGGAGAAGAACTAAGGGCACAG
GGGAGGATGTGCACAAATCTCTGAGCACCTTGAGAAGTGAAGATTGTCAACAGAATATTT
TGTTTAGGTCAAAGTCATCCTTTCATGGAACAGCAGTTTGCTAGCCAGAAGAACTCAGTT
AAGAGTGGAAAGCCTGCTGACGTAGGACAGGGAATTCTGACAGTAAATCACCTTTCCTGG
AATAGATAGGCTTTCTGGTAACTAGTGCTTAATTGTGCCAAGCACTGTTGCAAATTCTCG
TTATAATTCTCATTGAATAAATGAGAAAACCAAGGCTGAGAAATAATTGTGGTCAAAAGT
CACACAGCAAGGAACTGGCAGAGCTGGATCCAGAGCCAACCTTTCTCCAGCACCAGGGCC
TTAGAACTTGGCTGTTCTGTTCCAGCTCAGAAGGCAGCTGCCAGAATCTTTGTAAGACAT
CTATTGTACAAGGCAGGTGGTCCCAAGCCTGCCATTGGTAGCTCTCCAACTGAGAAGAGT
TGCCTTTGTTCTGTGGTCACGGCAGGGGCACCAGAGGTTGCCCTCCCAGTCACCAAAACT
TGGGCCCTGCCTCCATTCCAGAACTCATATGATTCCTGTGCCTGGAGAAATGAAAATAGT
TCATTTTTAAAAGCCTTTTAACAGATTTCCCACTTCCATCCCTCAAGAGGTGATTGTGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               271-425, - strand, RNAz p=0.999598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-425, - strand, RNAz p=0.999598

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-672, gnl|bosTau2|chr5 (22165921-22165247)
               

               
               1-672, gnl|Hg17|chr12 (47950556-47951583)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr5 (22165921-22165247)
               

               
               1-672, gnl|Hg17|chr12 (47950556-47951583)

	1-672, gnl\|bosTau2\|chr5 (22165921-22165247)
	1-672, gnl\|Hg17\|chr12 (47950556-47951583)