Ss1.1-Tes1-TES01D080013.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCTGAGCGCCCTGAGCGACGTGGGCGCCATCCAGCGGTCCCTGGCGGACGTCAGCAAG GACTGGAGGCAGAGCATCAGCACCATCGAGAGCCTGCGGGATGTGAAGGAGGCGGTCGTG CGGCACAGCCAGCTCGCCGCAGCCGTGGAAAAAATCGACAGGCGCATACTCGACCGGAAA AAGCAAACGGGCTTCGTTCCTCCTGGGAGGCCCAAGAGCTGGAAGGAGAAGATGTTTGCC GTCCTGGACAGGACGGTGACCACCAGGATCGAAGGCACGCAGGCCGACACGAGGGAGTCC GACAGGATGTGGCTTGTCCGCCACCTGGAGATCATCAGGAAGTACGTCCTGGACGACCTC ATCGTCGCCAAGAACCTGATGGCCCAGTGTTTCCCTCCCCATTACGACATTTTCAGGAAC CTCCTGCACATGTACCACCAGGCTCTGAGCACGCGGATGCAGGAGCTCGCGTCAGAGGAC CTGGAGGCCAATGAGATCGTGAGCCTGTTGACCTGGGTCCTGAACACCTACACGAGCACA GAGATGATGGGGAACGCGGAGCTGGCCCCCGAAGTGGACGTCGGCCTGCTGGAGCCTCTG CTCTCTCCTAGCGTGGTCTCCGAGCTGCTCGACACGTACATGTCCACTCTGACTTCGAAC ATCATCGGCTGGCTGCGGAAAGCCCTCGAAACGGACAAGAAGGACTGGGTGAAAGAGACG GAGCCTGAAGCCGACCAGGACGGCTACTACCAGACGACACTCCCCGCCATTGTCTTCCAG ATGTTCGAACAGAACCTTCAAGTCGCTGCTCAGATGAGTGAAGATTTGAAAACAAAGGTA CTGGTTTTGTGTCTGCAGCAGATGAATTCTTTCTTAAGTAGGTACAAGGAGGAGGCGCAG CTGTACAAGGAGGAGCACCTGCGGAACCGCCAGCAGCCGCACTGCTACGTGCAGTACATG GTGGCCATCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCTGAGCGCCCTGAGCGACGTGGGCGCCATCCAGCGGTCCCTGGCGGACGTCAGCAAG GACTGGAGGCAGAGCATCAGCACCATCGAGAGCCTGCGGGATGTGAAGGAGGCGGTCGTG CGGCACAGCCAGCTCGCCGCAGCCGTGGAAAAAATCGACAGGCGCATACTCGACCGGAAA AAGCAAACGGGCTTCGTTCCTCCTGGGAGGCCCAAGAGCTGGAAGGAGAAGATGTTTGCC GTCCTGGACAGGACGGTGACCACCAGGATCGAAGGCACGCAGGCCGACACGAGGGAGTCC GACAGGATGTGGCTTGTCCGCCACCTGGAGATCATCAGGAAGTACGTCCTGGACGACCTC ATCGTCGCCAAGAACCTGATGGCCCAGTGTTTCCCTCCCCATTACGACATTTTCAGGAAC CTCCTGCACATGTACCACCAGGCTCTGAGCACGCGGATGCAGGAGCTCGCGTCAGAGGAC CTGGAGGCCAATGAGATCGTGAGCCTGTTGACCTGGGTCCTGAACACCTACACGAGCACA GAGATGATGGGGAACGCGGAGCTGGCCCCCGAAGTGGACGTCGGCCTGCTGGAGCCTCTG CTCTCTCCTAGCGTGGTCTCCGAGCTGCTCGACACGTACATGTCCACTCTGACTTCGAAC ATCATCGGCTGGCTGCGGAAAGCCCTCGAAACGGACAAGAAGGACTGGGTGAAAGAGACG GAGCCTGAAGCCGACCAGGACGGCTACTACCAGACGACACTCCCCGCCATTGTCTTCCAG ATGTTCGAACAGAACCTTCAAGTCGCTGCTCAGATGAGTGAAGATTTGAAAACAAAGGTA CTGGTTTTGTGTCTGCAGCAGATGAATTCTTTCTTAAGTAGGTACAAGGAGGAGGCGCAG CTGTACAAGGAGGAGCACCTGCGGAACCGCCAGCAGCCGCACTGCTACGTGCAGTACATG GTGGCCATCATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 267-426, - strand, RNAz p=0.917258 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 267-426, - strand, RNAz p=0.917258 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 148-536, gnl|bosTau2|chr9 (46043934-46044322) | |
| 148-536, gnl|Hg17|chr5 (506778-507166) | |
| 148-536, gnl|Mm7|chr13 (71125780-71125392) | |
| 541-653, gnl|bosTau2|chr9 (46047065-46047177) | |
| 541-653, gnl|canFam2|chr34 (14805575-14805430) | |
| 541-653, gnl|danRer3|chr2 (44681157-44681289) | |
| 541-653, gnl|dasNov1|scaffold_19925 (18539-18401) | |
| 541-653, gnl|echTel1|scaffold_247683 (3344-3478) | |
| 541-653, gnl|fr1|chrUn (317199279-317199151) | |
| 541-653, gnl|galGal2|chr2 (88808776-88808903) | |
| 541-653, gnl|hg17|chr5 (509995-510143) | |
| 541-653, gnl|Hg17|chr5 (510008-510120) | |
| 541-653, gnl|mm7|chr13 (71122983-71122833) | |
| 541-653, gnl|Mm7|chr13 (71122967-71122855) | |
| 541-653, gnl|monDom2|scaffold_4 (13140651-13140798) | |
| 541-653, gnl|panTro1|chr4 (608415-608563) | |
| 541-653, gnl|rheMac2|chr6 (222711-222859) | |
| 541-653, gnl|rn3|chr1 (29917161-29917311) | |
| 541-653, gnl|tetNig1|chrUn_random (18582072-18582210) | |
| 541-653, gnl|xenTro1|scaffold_470 (465471-465616) | |
| 655-783, gnl|bosTau2|chr9 (46047458-46047586) | |
| 655-783, gnl|canFam2|chr34 (14804727-14804583) | |
| 655-783, gnl|danRer3|chr2 (44682267-44682403) | |
| 655-783, gnl|dasNov1|scaffold_19925 (17479-17330) | |
| 655-783, gnl|fr1|chrUn (317199030-317198894) | |
| 655-783, gnl|galGal2|chr2 (88809878-88810010) | |
| 655-783, gnl|hg17|chr5 (511012-511160) | |
| 655-783, gnl|Hg17|chr5 (511015-511143) | |
| 655-783, gnl|mm7|chr13 (71122075-71121931) | |
| 655-783, gnl|Mm7|chr13 (71122070-71121942) | |
| 655-783, gnl|monDom2|scaffold_4 (13142316-13142464) | |
| 655-783, gnl|oryCun1|scaffold_190038 (15177-15310) | |
| 655-783, gnl|panTro1|chr4 (609433-609581) | |
| 655-783, gnl|rheMac2|chr6 (223740-223888) | |
| 655-783, gnl|rn3|chr1 (29918047-29918188) | |
| 655-783, gnl|tetNig1|chrUn_random (18582344-18582484) | |
| 655-783, gnl|xenTro1|scaffold_470 (468436-468566) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-536, gnl|bosTau2|chr9 (46043934-46044322) | |
| 148-536, gnl|Hg17|chr5 (506778-507166) | |
| 148-536, gnl|Mm7|chr13 (71125780-71125392) | |
| 541-653, gnl|bosTau2|chr9 (46047065-46047177) | |
| 541-653, gnl|canFam2|chr34 (14805575-14805430) | |
| 541-653, gnl|danRer3|chr2 (44681157-44681289) | |
| 541-653, gnl|dasNov1|scaffold_19925 (18539-18401) | |
| 541-653, gnl|echTel1|scaffold_247683 (3344-3478) | |
| 541-653, gnl|fr1|chrUn (317199279-317199151) | |
| 541-653, gnl|galGal2|chr2 (88808776-88808903) | |
| 541-653, gnl|hg17|chr5 (509995-510143) | |
| 541-653, gnl|Hg17|chr5 (510008-510120) | |
| 541-653, gnl|mm7|chr13 (71122983-71122833) | |
| 541-653, gnl|Mm7|chr13 (71122967-71122855) | |
| 541-653, gnl|monDom2|scaffold_4 (13140651-13140798) | |
| 541-653, gnl|panTro1|chr4 (608415-608563) | |
| 541-653, gnl|rheMac2|chr6 (222711-222859) | |
| 541-653, gnl|rn3|chr1 (29917161-29917311) | |
| 541-653, gnl|tetNig1|chrUn_random (18582072-18582210) | |
| 541-653, gnl|xenTro1|scaffold_470 (465471-465616) | |
| 655-783, gnl|bosTau2|chr9 (46047458-46047586) | |
| 655-783, gnl|canFam2|chr34 (14804727-14804583) | |
| 655-783, gnl|danRer3|chr2 (44682267-44682403) | |
| 655-783, gnl|dasNov1|scaffold_19925 (17479-17330) | |
| 655-783, gnl|fr1|chrUn (317199030-317198894) | |
| 655-783, gnl|galGal2|chr2 (88809878-88810010) | |
| 655-783, gnl|hg17|chr5 (511012-511160) | |
| 655-783, gnl|Hg17|chr5 (511015-511143) | |
| 655-783, gnl|mm7|chr13 (71122075-71121931) | |
| 655-783, gnl|Mm7|chr13 (71122070-71121942) | |
| 655-783, gnl|monDom2|scaffold_4 (13142316-13142464) | |
| 655-783, gnl|oryCun1|scaffold_190038 (15177-15310) | |
| 655-783, gnl|panTro1|chr4 (609433-609581) | |
| 655-783, gnl|rheMac2|chr6 (223740-223888) | |
| 655-783, gnl|rn3|chr1 (29918047-29918188) | |
| 655-783, gnl|tetNig1|chrUn_random (18582344-18582484) | |
| 655-783, gnl|xenTro1|scaffold_470 (468436-468566) |