Non-Coding RNA Search

Ss1.1-Tes1-TES01E010033.5

Sequence:


               
               CCCCTGTAGTGCCTGCAAACAGCGCTGCCGCCAGTTCCGGGGGGGCTGCTCCAGGGAAGT
TGTGTGTCCAGCATCAACCTCTGCCACACGGACAGCAGCCACCAGCAGGGATGGGTCCTC
TCGTGCCAGATGCCCCGCAGCCCCTGCAGCCTCCTCCACAGCCTGGCCCAGAGCCTCGGC
CAGAGGACCCAGCCCCTCGAAGACTGGCAGCTCCAGGCCCCCCAGAGGCGCCCGAGTCTC
CTCTTGCAGCTGCTCCAGCTCCCGAAGGCTCACATATGCCTCCAAGAGCCGCTGGGCATC
AATCAGGGTCTGTGTGTGGGCCACTGCAGCCGGCACAGCTCGCAGCCGGGGCAGCAGCTG
AGACATGGCCTGCAGTTGCTTGTGCTGGACAACCTGCCTCTGAAGGGGTTCTAGGGTCTT
TGCAGCCTCGGCCATATCCCGGAGCAATCCACGGGCCTGGCCCAAGGCCTCACGGGCTCC
CTGCACGGCTTCAAGAGCCCGGGCCAGCTGCCACACACCAGTCTTCACACCCTCCAGGTA
GGACTGCACCACCGACTTGATGCGTGCTTCCAGAGAACAGGTCCGCTGCACCTCGCGGCT
GCGGTACTGGCCCAGCCTGGCCAGCTGTTCCGGCCGGTAGAAGACACCTGAGGCCCACTT
GAGTGCTGCACCCCGGGCCAGCTGCTCCGCCCTCTCCTGCTCCGGCCACTCAGGTCCTAG
GCAGGAAGAGCCTGGGCAGCCGCATCTTTTGGGCAGGGCCCGGGGGAAATGCAGGCTGCA
TTTTGTTGTTGGCTGCTGAGTCCATGGCTGGCCCTGGAGAAGCTGGAGCAGAGGCAGGAG
TGGGGGTGAGGTGGTCCAGGTTAGCACAGGCAGAGTGGGTGCTCCTCTGAGCTGCAGCCT
CTGTCAAGGTCCCTCTGAGCAGGAGGAGGCCTTCCTAAGGAAGCGCTTGGCAAGCAGCAG
GAAAATCTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTGTAGTGCCTGCAAACAGCGCTGCCGCCAGTTCCGGGGGGGCTGCTCCAGGGAAGT
TGTGTGTCCAGCATCAACCTCTGCCACACGGACAGCAGCCACCAGCAGGGATGGGTCCTC
TCGTGCCAGATGCCCCGCAGCCCCTGCAGCCTCCTCCACAGCCTGGCCCAGAGCCTCGGC
CAGAGGACCCAGCCCCTCGAAGACTGGCAGCTCCAGGCCCCCCAGAGGCGCCCGAGTCTC
CTCTTGCAGCTGCTCCAGCTCCCGAAGGCTCACATATGCCTCCAAGAGCCGCTGGGCATC
AATCAGGGTCTGTGTGTGGGCCACTGCAGCCGGCACAGCTCGCAGCCGGGGCAGCAGCTG
AGACATGGCCTGCAGTTGCTTGTGCTGGACAACCTGCCTCTGAAGGGGTTCTAGGGTCTT
TGCAGCCTCGGCCATATCCCGGAGCAATCCACGGGCCTGGCCCAAGGCCTCACGGGCTCC
CTGCACGGCTTCAAGAGCCCGGGCCAGCTGCCACACACCAGTCTTCACACCCTCCAGGTA
GGACTGCACCACCGACTTGATGCGTGCTTCCAGAGAACAGGTCCGCTGCACCTCGCGGCT
GCGGTACTGGCCCAGCCTGGCCAGCTGTTCCGGCCGGTAGAAGACACCTGAGGCCCACTT
GAGTGCTGCACCCCGGGCCAGCTGCTCCGCCCTCTCCTGCTCCGGCCACTCAGGTCCTAG
GCAGGAAGAGCCTGGGCAGCCGCATCTTTTGGGCAGGGCCCGGGGGAAATGCAGGCTGCA
TTTTGTTGTTGGCTGCTGAGTCCATGGCTGGCCCTGGAGAAGCTGGAGCAGAGGCAGGAG
TGGGGGTGAGGTGGTCCAGGTTAGCACAGGCAGAGTGGGTGCTCCTCTGAGCTGCAGCCT
CTGTCAAGGTCCCTCTGAGCAGGAGGAGGCCTTCCTAAGGAAGCGCTTGGCAAGCAGCAG
GAAAATCTCTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61809001|ref|XP_604673.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809001|ref|XP_604673.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               94-261, - strand, RNAz p=0.742213
               

               
               123-282, - strand, RNAz p=0.791251
               

               
               675-771, + strand, RNAz p=0.919426

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-261, - strand, RNAz p=0.742213
               

               
               123-282, - strand, RNAz p=0.791251
               

               
               675-771, + strand, RNAz p=0.919426

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               4-336, gnl|bosTau2|chr18 (28370899-28371231)
               

               
               4-336, gnl|canFam2|chr5 (85186900-85186483)
               

               
               4-336, gnl|dasNov1|scaffold_255376 (295-712)
               

               
               4-336, gnl|echTel1|scaffold_318276 (37568-37151)
               

               
               4-336, gnl|galGal2|chr11 (969301-969767)
               

               
               4-336, gnl|hg17|chr16 (65778850-65779267)
               

               
               4-336, gnl|Hg17|chr16 (65778910-65779242)
               

               
               4-336, gnl|mm7|chr8 (103892112-103892522)
               

               
               4-336, gnl|Mm7|chr8 (103892172-103892501)
               

               
               4-336, gnl|monDom2|scaffold_23 (19714633-19714209)
               

               
               4-336, gnl|oryCun1|scaffold_200187 (21750-22167)
               

               
               4-336, gnl|panTro1|chr18 (60038988-60039406)
               

               
               4-336, gnl|rheMac2|chr20 (65487541-65487958)
               

               
               4-336, gnl|rn3|chr19 (35112489-35112899)
               


               
               556-771, gnl|bosTau2|chr18 (28372399-28372614)
               

               
               556-771, gnl|Hg17|chr16 (65780424-65780739)
               

               
               556-771, gnl|Mm7|chr8 (103893899-103894109)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-336, gnl|bosTau2|chr18 (28370899-28371231)
               

               
               4-336, gnl|canFam2|chr5 (85186900-85186483)
               

               
               4-336, gnl|dasNov1|scaffold_255376 (295-712)
               

               
               4-336, gnl|echTel1|scaffold_318276 (37568-37151)
               

               
               4-336, gnl|galGal2|chr11 (969301-969767)
               

               
               4-336, gnl|hg17|chr16 (65778850-65779267)
               

               
               4-336, gnl|Hg17|chr16 (65778910-65779242)
               

               
               4-336, gnl|mm7|chr8 (103892112-103892522)
               

               
               4-336, gnl|Mm7|chr8 (103892172-103892501)
               

               
               4-336, gnl|monDom2|scaffold_23 (19714633-19714209)
               

               
               4-336, gnl|oryCun1|scaffold_200187 (21750-22167)
               

               
               4-336, gnl|panTro1|chr18 (60038988-60039406)
               

               
               4-336, gnl|rheMac2|chr20 (65487541-65487958)
               

               
               4-336, gnl|rn3|chr19 (35112489-35112899)
               


               
               556-771, gnl|bosTau2|chr18 (28372399-28372614)
               

               
               556-771, gnl|Hg17|chr16 (65780424-65780739)
               

               
               556-771, gnl|Mm7|chr8 (103893899-103894109)

	94-261, - strand, RNAz p=0.742213
	123-282, - strand, RNAz p=0.791251
	675-771, + strand, RNAz p=0.919426

	4-336, gnl\|bosTau2\|chr18 (28370899-28371231)
	4-336, gnl\|canFam2\|chr5 (85186900-85186483)
	4-336, gnl\|dasNov1\|scaffold_255376 (295-712)
	4-336, gnl\|echTel1\|scaffold_318276 (37568-37151)
	4-336, gnl\|galGal2\|chr11 (969301-969767)
	4-336, gnl\|hg17\|chr16 (65778850-65779267)
	4-336, gnl\|Hg17\|chr16 (65778910-65779242)
	4-336, gnl\|mm7\|chr8 (103892112-103892522)
	4-336, gnl\|Mm7\|chr8 (103892172-103892501)
	4-336, gnl\|monDom2\|scaffold_23 (19714633-19714209)
	4-336, gnl\|oryCun1\|scaffold_200187 (21750-22167)
	4-336, gnl\|panTro1\|chr18 (60038988-60039406)
	4-336, gnl\|rheMac2\|chr20 (65487541-65487958)
	4-336, gnl\|rn3\|chr19 (35112489-35112899)

	556-771, gnl\|bosTau2\|chr18 (28372399-28372614)
	556-771, gnl\|Hg17\|chr16 (65780424-65780739)
	556-771, gnl\|Mm7\|chr8 (103893899-103894109)