Non-Coding RNA Search

Ss1.1-Tes1-TES01E110086.5

Sequence:


               
               GCTTCCTGAGATCCCGACCCATCTCAGGTCCCCTTTGGGAGGCGGATTCCAAGGGGAAAA
GGGGAGACGTCCCCTTTTCTTTCACGGGCCCGGGGAATTAGGGGATGGGTAGGGGAGGTG
GCTTGGGGGCTGCCCTCTCAAGAAGAAGGGACCGCCCGGGGTTGCCTCAGGTCACCCTTT
CCCGAGAAATCCGAAAGAAGGGCCGGCAGAGCGTCTGGAAAATTCCAGGCGGCGGCGGCG
GAGGGATCTCTGCAGAGGACGCATCACTCCCGGGAGAGGGGGTGAGGGGGCGCGTGACTC
CTCGTGATCGCAGGTGCTGAAGCTCCCACCGTTTGGAAGAAGCCAACTAACTTGATGCTG
CCCACAGCACGTAGACCCCAGACCCGATGGAACCAGCACGTTAAAGCTGCCGACTCCCAA
TGACCTCCCCACCCACCAATCAGGAGCATGTCCAGGAGCTGACCACGGCCGGCTCCTCGG
ACACTGTAGGACTCCTCACGGGCCCCTCCGAGGGCGGCACCAGCCTGCTGTGTGTTCCCT
CTTTGCCTGGCAGTTAAAGCTGCTTTTTCTGCTTCCTCCAACTGTCTCCGTGCTTCTGTC
TGGCACTGGTGCCGAGATTTCTACTCTCCCCCTCCCAAGAGCCCCTCGGACTGGGCCTCT
CCCTTCATAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCTGAGATCCCGACCCATCTCAGGTCCCCTTTGGGAGGCGGATTCCAAGGGGAAAA
GGGGAGACGTCCCCTTTTCTTTCACGGGCCCGGGGAATTAGGGGATGGGTAGGGGAGGTG
GCTTGGGGGCTGCCCTCTCAAGAAGAAGGGACCGCCCGGGGTTGCCTCAGGTCACCCTTT
CCCGAGAAATCCGAAAGAAGGGCCGGCAGAGCGTCTGGAAAATTCCAGGCGGCGGCGGCG
GAGGGATCTCTGCAGAGGACGCATCACTCCCGGGAGAGGGGGTGAGGGGGCGCGTGACTC
CTCGTGATCGCAGGTGCTGAAGCTCCCACCGTTTGGAAGAAGCCAACTAACTTGATGCTG
CCCACAGCACGTAGACCCCAGACCCGATGGAACCAGCACGTTAAAGCTGCCGACTCCCAA
TGACCTCCCCACCCACCAATCAGGAGCATGTCCAGGAGCTGACCACGGCCGGCTCCTCGG
ACACTGTAGGACTCCTCACGGGCCCCTCCGAGGGCGGCACCAGCCTGCTGTGTGTTCCCT
CTTTGCCTGGCAGTTAAAGCTGCTTTTTCTGCTTCCTCCAACTGTCTCCGTGCTTCTGTC
TGGCACTGGTGCCGAGATTTCTACTCTCCCCCTCCCAAGAGCCCCTCGGACTGGGCCTCT
CCCTTCATAGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               179-294, + strand, RNAz p=0.974689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-294, + strand, RNAz p=0.974689

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               92-294, gnl|bosTau2|chr29 (38493682-38493890)
               

               
               92-294, gnl|Hg17|chr11 (64946527-64946354)
               

               
               92-294, gnl|Mm7|chr19 (5740592-5740773)
               


               
               310-545, gnl|bosTau2|chr20 (35704891-35704660)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-294, gnl|bosTau2|chr29 (38493682-38493890)
               

               
               92-294, gnl|Hg17|chr11 (64946527-64946354)
               

               
               92-294, gnl|Mm7|chr19 (5740592-5740773)
               


               
               310-545, gnl|bosTau2|chr20 (35704891-35704660)

	92-294, gnl\|bosTau2\|chr29 (38493682-38493890)
	92-294, gnl\|Hg17\|chr11 (64946527-64946354)
	92-294, gnl\|Mm7\|chr19 (5740592-5740773)

	310-545, gnl\|bosTau2\|chr20 (35704891-35704660)