Non-Coding RNA Search

Ss1.1-Tes1-TES01F110031.5

Sequence:


               
               TTCAGCGGCTGCGACGACACTGGGGGAAGGCGGCGGCGCCCGGTCTCGAGACTCCCGGCT
GCTTCCATCGGAGTCCTTGGACACTGCCAGCTCGGACTGAGCGTGCATCCTCGCTCCCCA
GCGGACACAGAGGAGCCTCCGGTGTCGGCTCCGGTCAGCCCCTCCTCCATCTGCTGGAAC
CCGCGCCGGAGCCAGGCCAGGCCCGGCCTCCGACTGGCTCCCGGAGCTCTGCATCGACTC
GCCCGGAGCGACAGCGCTCTGCCCCAGAGCTCAGAAACCTGACCCTTCAAAGAGTCGGCC
TTGTGCTCGCCACCGTCACCTGCTGGTTGGATTTCGGAAACCCACTGTCTGAAGACCACA
TAGAGGAATCGCTGACCCCCGGAATCGGACCTAAATCTCTCGTCCCTCTCTGGCTTCCCT
CTGCTGTTTTTATCCGTTCTCCCAATCTTTCCGGAATTTCTGTGCCCAGAACCCTCCCCC
ACCACAGTAGCTGGAGTGAGCCCCACATCTTGCTGCCTTGTACTCCAATTTGTGCCTCCG
ACCCAGAGACTGCCTGAACTTTACGCCCCAGTTCTGCACACACCCAGGAAGTTCCGCCTT
TTCTTCTCTTTCGGTGTCCCCAGTACTCCTCAAAATTTCCCCTCCTCCTGTGCCCTCTCC
GCCCCCCGCCTTTGGGGGCCCTGTGACCCTGAATGTGGGGGGCACGCTATATTCCACCAC
TTTGGAGACGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGCGGCTGCGACGACACTGGGGGAAGGCGGCGGCGCCCGGTCTCGAGACTCCCGGCT
GCTTCCATCGGAGTCCTTGGACACTGCCAGCTCGGACTGAGCGTGCATCCTCGCTCCCCA
GCGGACACAGAGGAGCCTCCGGTGTCGGCTCCGGTCAGCCCCTCCTCCATCTGCTGGAAC
CCGCGCCGGAGCCAGGCCAGGCCCGGCCTCCGACTGGCTCCCGGAGCTCTGCATCGACTC
GCCCGGAGCGACAGCGCTCTGCCCCAGAGCTCAGAAACCTGACCCTTCAAAGAGTCGGCC
TTGTGCTCGCCACCGTCACCTGCTGGTTGGATTTCGGAAACCCACTGTCTGAAGACCACA
TAGAGGAATCGCTGACCCCCGGAATCGGACCTAAATCTCTCGTCCCTCTCTGGCTTCCCT
CTGCTGTTTTTATCCGTTCTCCCAATCTTTCCGGAATTTCTGTGCCCAGAACCCTCCCCC
ACCACAGTAGCTGGAGTGAGCCCCACATCTTGCTGCCTTGTACTCCAATTTGTGCCTCCG
ACCCAGAGACTGCCTGAACTTTACGCCCCAGTTCTGCACACACCCAGGAAGTTCCGCCTT
TTCTTCTCTTTCGGTGTCCCCAGTACTCCTCAAAATTTCCCCTCCTCCTGTGCCCTCTCC
GCCCCCCGCCTTTGGGGGCCCTGTGACCCTGAATGTGGGGGGCACGCTATATTCCACCAC
TTTGGAGACGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               576-729, - strand, RNAz p=0.987062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               576-729, - strand, RNAz p=0.987062

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-729, gnl|bosTau2|chr19 (20876469-20875750)
               

               
               1-729, gnl|Hg17|chr17 (7196227-7196963)
               

               
               1-729, gnl|Mm7|chr11 (69962530-69961807)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-729, gnl|bosTau2|chr19 (20876469-20875750)
               

               
               1-729, gnl|Hg17|chr17 (7196227-7196963)
               

               
               1-729, gnl|Mm7|chr11 (69962530-69961807)

	1-729, gnl\|bosTau2\|chr19 (20876469-20875750)
	1-729, gnl\|Hg17\|chr17 (7196227-7196963)
	1-729, gnl\|Mm7\|chr11 (69962530-69961807)