Non-Coding RNA Search

Ss1.1-Tes1-TES01F120009.5

Sequence:


               
               GGGTTACTCATTTAAGCCCGGCCCGGCCAGACCTCCCAGTCATAGGGGGCGCTGTGCACC
CTCTTCTCTCCTGTACAAAAAGGACTCCCGCTCTCATATCCGGGGTAGATGGAAGGGGCG
GGTCCAGGCCTGGGTTCGGCGCGTCCAAAAGGCTGGTCCTGTGCCGGAGCAACAGGAGAG
CGAAAGGCGGTAGACACTACGTGCGGCACCAACCTCTTAGAGTGCAGAGGCGGGGAGGGC
AGCAGAAGGCCGTCCTCTGGTTAGTGACCCGCGTGGGACCACGTGACTGCAGAGGGCCCG
CCTCCGCCGCCGGAACCAGGTGTTCGAATCCCGTTTCCAGAACTGGCGGCGTCCCAGTCC
TGCCGCCGTGAGGCGCCAGAGGACCCGCCCGGGCGCTGATGGCAGCACCGGTCCGCCTGG
GTCGGAAACGCCCGCTGCCGCTTTGCCCAAACCCGCTTTTCGTACGCTGGCTGACCGAGT
GGCGGGACGAGGCCGCCAGCAGGGGGCGCCGCACTCAATTCGTGTTTCAGAAGGCGCTGC
GCTCCCTCCGGCGGTACCCACTGCCCCTGCGCAGCGGCAAGGAAGCTAAGATCCTACAGC
ACTTTGGAGACGGGCTCTGCCGAATGCTGGACCAGCGGCTGCAGCAACACAGAACATCAG
GTGGTGACCATGCCCCAGGATCACCATCTGGACGGAAGAGTCCAGCCCGGGAAAGGCCAC
CTGCTGAAGTCCAGGACTCCTCCATGCCAGTCCCGACCCAGCGCAAGGCAGGGGGCCCTG
GCAGCTACTGGCCAGCTCGGCACTCAGGAGCGCGAGCGGTACTGCTGCTACTGTACAGGG
AACACCTGAATCCTAGCGGCCATGGCTTCCTAACCAAGGAGGAGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTACTCATTTAAGCCCGGCCCGGCCAGACCTCCCAGTCATAGGGGGCGCTGTGCACC
CTCTTCTCTCCTGTACAAAAAGGACTCCCGCTCTCATATCCGGGGTAGATGGAAGGGGCG
GGTCCAGGCCTGGGTTCGGCGCGTCCAAAAGGCTGGTCCTGTGCCGGAGCAACAGGAGAG
CGAAAGGCGGTAGACACTACGTGCGGCACCAACCTCTTAGAGTGCAGAGGCGGGGAGGGC
AGCAGAAGGCCGTCCTCTGGTTAGTGACCCGCGTGGGACCACGTGACTGCAGAGGGCCCG
CCTCCGCCGCCGGAACCAGGTGTTCGAATCCCGTTTCCAGAACTGGCGGCGTCCCAGTCC
TGCCGCCGTGAGGCGCCAGAGGACCCGCCCGGGCGCTGATGGCAGCACCGGTCCGCCTGG
GTCGGAAACGCCCGCTGCCGCTTTGCCCAAACCCGCTTTTCGTACGCTGGCTGACCGAGT
GGCGGGACGAGGCCGCCAGCAGGGGGCGCCGCACTCAATTCGTGTTTCAGAAGGCGCTGC
GCTCCCTCCGGCGGTACCCACTGCCCCTGCGCAGCGGCAAGGAAGCTAAGATCCTACAGC
ACTTTGGAGACGGGCTCTGCCGAATGCTGGACCAGCGGCTGCAGCAACACAGAACATCAG
GTGGTGACCATGCCCCAGGATCACCATCTGGACGGAAGAGTCCAGCCCGGGAAAGGCCAC
CTGCTGAAGTCCAGGACTCCTCCATGCCAGTCCCGACCCAGCGCAAGGCAGGGGGCCCTG
GCAGCTACTGGCCAGCTCGGCACTCAGGAGCGCGAGCGGTACTGCTGCTACTGTACAGGG
AACACCTGAATCCTAGCGGCCATGGCTTCCTAACCAAGGAGGAGCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               217-312, - strand, RNAz p=0.872428

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-312, - strand, RNAz p=0.872428

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-534, gnl|bosTau2|chr29 (30478206-30478744)
               

               
               18-534, gnl|Hg17|chr11 (65384396-65384936)
               

               
               18-534, gnl|Mm7|chr19 (5383321-5382793)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-534, gnl|bosTau2|chr29 (30478206-30478744)
               

               
               18-534, gnl|Hg17|chr11 (65384396-65384936)
               

               
               18-534, gnl|Mm7|chr19 (5383321-5382793)

	18-534, gnl\|bosTau2\|chr29 (30478206-30478744)
	18-534, gnl\|Hg17\|chr11 (65384396-65384936)
	18-534, gnl\|Mm7\|chr19 (5383321-5382793)