Non-Coding RNA Search

Ss1.1-Tes1-TES01G040024.5

Sequence:


               
               CTTCTTGCGGAAGGAGTATGGTGGGCTGGATGTGCTGGTCAACAACGCGGCCATCGCCTT
CCAGTGTAAGTGGATGTGAGCTCAAAGGATACAGCCTTCTGAGGGGGGCCAGCCTGGGTG
GGTGGGGGCTGCTGCCTGAATGTCCACTGTGGGACCTCGAACCTGTTCCCAAAAAGCTGT
TAAGTACAAATGCCAGTGAATTAGGAAGTGGAGACTGGCCATGTCCTCCCACACTCATGT
GGCCCTGGTGACTGGCTCAACAAGGGTATTGGCCTTGCCATCGTGCGGGAGCTGTGTCGG
CAGTTCTCGGGGGATGTGGTACTCACAGCCAGGGACGTAGCTCGTGGTCAGGCGGCGGTG
AAGCAGCTGGAGGCAGAGGGCCTGAGCCCACGCTTCCACCAGCTGGACATCGATGACCTG
CAGAGCATCCGGGTCCTGCGTGACTTCCTGTGCAAGGAGTATGGGGGACTGGACGTGCTG
GTCAACAATGCGGCCATCATCACCAAAAGTGACGACCCCACACTGTCTCATATTCGGGCA
GAAATGATTATGAAAACCAACTTCGTGGGAACCCGAGATGTGTGCACCGAGCTTCTGCCG
CTAATAAGACCCAAAGGCAGAGTGGTGAATGTGTCTAGCACTGAGGGTGTCAGAGCCCTT
AACGAGTGCAGCCCTGAATTGCAGCAGAAGTTCAAGAGTGAGACCATCACAGAGGAGGAG
CTGGTGGGGCTCATGAACAAGTTTGTGGAAGACACAAAGAACGGGGTACACAGGAAGGAG
GGATGGAGTGATTCGACCTACGGAGTGACAAAAATTGGGGTCTCTGTGTTGTCCAGGATC
TATGCCAGGAAACTGAGTGAGCAGAGAGCAGGGGACAAGATCCTCCTGAATGCCTGCTGC
CCAGGGTGGGTGAGAACTGATATGGGGGGACCCAAAGCCCCCAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTGCGGAAGGAGTATGGTGGGCTGGATGTGCTGGTCAACAACGCGGCCATCGCCTT
CCAGTGTAAGTGGATGTGAGCTCAAAGGATACAGCCTTCTGAGGGGGGCCAGCCTGGGTG
GGTGGGGGCTGCTGCCTGAATGTCCACTGTGGGACCTCGAACCTGTTCCCAAAAAGCTGT
TAAGTACAAATGCCAGTGAATTAGGAAGTGGAGACTGGCCATGTCCTCCCACACTCATGT
GGCCCTGGTGACTGGCTCAACAAGGGTATTGGCCTTGCCATCGTGCGGGAGCTGTGTCGG
CAGTTCTCGGGGGATGTGGTACTCACAGCCAGGGACGTAGCTCGTGGTCAGGCGGCGGTG
AAGCAGCTGGAGGCAGAGGGCCTGAGCCCACGCTTCCACCAGCTGGACATCGATGACCTG
CAGAGCATCCGGGTCCTGCGTGACTTCCTGTGCAAGGAGTATGGGGGACTGGACGTGCTG
GTCAACAATGCGGCCATCATCACCAAAAGTGACGACCCCACACTGTCTCATATTCGGGCA
GAAATGATTATGAAAACCAACTTCGTGGGAACCCGAGATGTGTGCACCGAGCTTCTGCCG
CTAATAAGACCCAAAGGCAGAGTGGTGAATGTGTCTAGCACTGAGGGTGTCAGAGCCCTT
AACGAGTGCAGCCCTGAATTGCAGCAGAAGTTCAAGAGTGAGACCATCACAGAGGAGGAG
CTGGTGGGGCTCATGAACAAGTTTGTGGAAGACACAAAGAACGGGGTACACAGGAAGGAG
GGATGGAGTGATTCGACCTACGGAGTGACAAAAATTGGGGTCTCTGTGTTGTCCAGGATC
TATGCCAGGAAACTGAGTGAGCAGAGAGCAGGGGACAAGATCCTCCTGAATGCCTGCTGC
CCAGGGTGGGTGAGAACTGATATGGGGGGACCCAAAGCCCCCAAGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47522960|ref|NP_999238.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522960|ref|NP_999238.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               209-320, + strand, RNAz p=0.550072
               

               
               654-773, + strand, RNAz p=0.671147

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-320, + strand, RNAz p=0.550072
               

               
               654-773, + strand, RNAz p=0.671147

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001757, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001757, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-163, gnl|bosTau2|chr1 (99363637-99363795)
               

               
               1-163, gnl|Mm7|chr16 (93667683-93667824)
               


               
               209-510, gnl|bosTau2|chr1 (96144790-96145092)
               

               
               209-510, gnl|Hg17|chr21 (36364266-36364574)
               

               
               209-510, gnl|Mm7|chr16 (93667446-93667749)
               


               
               615-948, gnl|bosTau2|chr1 (96160732-96161065)
               

               
               615-948, gnl|Hg17|chr21 (36440242-36440575)
               

               
               615-948, gnl|Mm7|chr16 (93689135-93689468)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-163, gnl|bosTau2|chr1 (99363637-99363795)
               

               
               1-163, gnl|Mm7|chr16 (93667683-93667824)
               


               
               209-510, gnl|bosTau2|chr1 (96144790-96145092)
               

               
               209-510, gnl|Hg17|chr21 (36364266-36364574)
               

               
               209-510, gnl|Mm7|chr16 (93667446-93667749)
               


               
               615-948, gnl|bosTau2|chr1 (96160732-96161065)
               

               
               615-948, gnl|Hg17|chr21 (36440242-36440575)
               

               
               615-948, gnl|Mm7|chr16 (93689135-93689468)

	209-320, + strand, RNAz p=0.550072
	654-773, + strand, RNAz p=0.671147

	1-163, gnl\|bosTau2\|chr1 (99363637-99363795)
	1-163, gnl\|Mm7\|chr16 (93667683-93667824)

	209-510, gnl\|bosTau2\|chr1 (96144790-96145092)
	209-510, gnl\|Hg17\|chr21 (36364266-36364574)
	209-510, gnl\|Mm7\|chr16 (93667446-93667749)

	615-948, gnl\|bosTau2\|chr1 (96160732-96161065)
	615-948, gnl\|Hg17\|chr21 (36440242-36440575)
	615-948, gnl\|Mm7\|chr16 (93689135-93689468)