Non-Coding RNA Search

Ss1.1-Thy1-THY010003A10.5

Sequence:


               
               TGTCCCCGCGGTGCCCACTCTGCAACGTCCTGTGGAGGGGTTAGAAAAATAAAGACAGAT
GGTAACTGTACCTCCCCATCTGCCAGAACGTCAAGGTGGAGTAGATTCCCCCAAATGAGC
AGAGTGATTGCATAAAAAAGCTCAAGCCAGCAACGAATTGCATAATAAGTCCGTCCTGGA
AAGACTTTGAGGATATTTGCTTGACTCTTTTCTTTTCTTTTTTTAACGATGATGCTAGCT
AGCTCTTACCGAAGTGATACAGCTGCGTGCTTCTTTCTCAATTCTCTAAACTCATGTAGT
CGGTAAATGCTTGTTACATGAATGAAGGTCATGACTGGAAGATAGCTTTTAGCATCATGA
ATGCAACAAGAAAGGTAACAGTCTAAGGATGACAGCTTTCTCATTGTACCTCTACTCACC
TGGACCTAAGCGAACCCAGCTTCCTTGGGCTTCTCCTGTTACTGCCTTCAAAAGCTGTAG
AGTGTGCATGATACAGAAGGAGAAAACTCCCTGGAAGTAGGGCAAGCCTGAGTGAGTTAC
AGCAGCAGAGGCTTGGGTAGTAAAGGCAGCAATGAGAAATGGGAAGGACTTCAAGAGCCT
CAGGTCATAAAGGACAGTGACAGCCCTTCCCCAATATCCCAACATGACATCCTGGAAAAG
AATATTGTAATCACTGGTAACATGATAAAAAAAAAAATAGACAAGCATCTAACACTAGCC
ACAGAAATGGTGGACATGGTTGCATTTTTTTTAGAGTGGACCTAGAAAGTATAAACATTT
TTTCATCTATAGAGAGCACTAGGTTTTCCGTGTCGCCAGCTCCCAAGTATTTCTCTGCTA
TGCTGATGGATCAGATGTTGCCCAGGACGGCTGATCAGCAGTGGGTTAAGAGGAAGCAAC
CAAGGGGCTGGTAGCTGACAGCCCCCAAGGAGCCTGGACTGCCAGGAAGGAGTCCATTCT
ATCCAGTCCAGGGCAGAAAACCAGCAGAGAAGGGAATGGACAGAACTCCTGCTGCCCAGA
GGAATTCTCTCTCCCACCACCTGGCCAGAGGTGTGGTGGCCAAGGGAATGACAAGGAGTT
TCTCAACCAGCCAGCATGTTCCAGGCTGTACCGTCTTTTAGGGGACCCAGGATCTCTATG
CATCGGGTTATGTGGGCCCAGTGAGTCCCCACCCCATCCCTAGTCTATGTCAAGACACTT
CCTCAAGGAAGTTGGGCGGGAGGTGAGTGATGTGCTTACGACTGGCAGGCCTGAAGGCAA
GGGCCACCTGTGTCTCCTGGATGTTTCATAAGCAGGAAAGCTAGCTTGGAGTGGAATCTG
AGCCCTTGGTCACACCAAGTCCATGCACTTCCGCTCTGCTTCTGGGCAGCGTTTTCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCCGCGGTGCCCACTCTGCAACGTCCTGTGGAGGGGTTAGAAAAATAAAGACAGAT
GGTAACTGTACCTCCCCATCTGCCAGAACGTCAAGGTGGAGTAGATTCCCCCAAATGAGC
AGAGTGATTGCATAAAAAAGCTCAAGCCAGCAACGAATTGCATAATAAGTCCGTCCTGGA
AAGACTTTGAGGATATTTGCTTGACTCTTTTCTTTTCTTTTTTTAACGATGATGCTAGCT
AGCTCTTACCGAAGTGATACAGCTGCGTGCTTCTTTCTCAATTCTCTAAACTCATGTAGT
CGGTAAATGCTTGTTACATGAATGAAGGTCATGACTGGAAGATAGCTTTTAGCATCATGA
ATGCAACAAGAAAGGTAACAGTCTAAGGATGACAGCTTTCTCATTGTACCTCTACTCACC
TGGACCTAAGCGAACCCAGCTTCCTTGGGCTTCTCCTGTTACTGCCTTCAAAAGCTGTAG
AGTGTGCATGATACAGAAGGAGAAAACTCCCTGGAAGTAGGGCAAGCCTGAGTGAGTTAC
AGCAGCAGAGGCTTGGGTAGTAAAGGCAGCAATGAGAAATGGGAAGGACTTCAAGAGCCT
CAGGTCATAAAGGACAGTGACAGCCCTTCCCCAATATCCCAACATGACATCCTGGAAAAG
AATATTGTAATCACTGGTAACATGATAAAAAAAAAAATAGACAAGCATCTAACACTAGCC
ACAGAAATGGTGGACATGGTTGCATTTTTTTTAGAGTGGACCTAGAAAGTATAAACATTT
TTTCATCTATAGAGAGCACTAGGTTTTCCGTGTCGCCAGCTCCCAAGTATTTCTCTGCTA
TGCTGATGGATCAGATGTTGCCCAGGACGGCTGATCAGCAGTGGGTTAAGAGGAAGCAAC
CAAGGGGCTGGTAGCTGACAGCCCCCAAGGAGCCTGGACTGCCAGGAAGGAGTCCATTCT
ATCCAGTCCAGGGCAGAAAACCAGCAGAGAAGGGAATGGACAGAACTCCTGCTGCCCAGA
GGAATTCTCTCTCCCACCACCTGGCCAGAGGTGTGGTGGCCAAGGGAATGACAAGGAGTT
TCTCAACCAGCCAGCATGTTCCAGGCTGTACCGTCTTTTAGGGGACCCAGGATCTCTATG
CATCGGGTTATGTGGGCCCAGTGAGTCCCCACCCCATCCCTAGTCTATGTCAAGACACTT
CCTCAAGGAAGTTGGGCGGGAGGTGAGTGATGTGCTTACGACTGGCAGGCCTGAAGGCAA
GGGCCACCTGTGTCTCCTGGATGTTTCATAAGCAGGAAAGCTAGCTTGGAGTGGAATCTG
AGCCCTTGGTCACACCAAGTCCATGCACTTCCGCTCTGCTTCTGGGCAGCGTTTTCTGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               121-239, + strand, RNAz p=0.714753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-239, + strand, RNAz p=0.714753

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-699, gnl|bosTau2|chr4 (29181940-29181270)
               

               
               1-699, gnl|Hg17|chr7 (36359299-36358619)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-699, gnl|bosTau2|chr4 (29181940-29181270)
               

               
               1-699, gnl|Hg17|chr7 (36359299-36358619)

	1-699, gnl\|bosTau2\|chr4 (29181940-29181270)
	1-699, gnl\|Hg17\|chr7 (36359299-36358619)