Non-Coding RNA Search

Ss1.1-Thy1-THY010003E04.5

Sequence:


               
               AAATTTATCTTCAGACAAGCGACCGCGCCAGCCGCGAATCGGATCCCTATGGAGGTGGCA
TAGGCGATATCCCAGAGCTGAGAGCATCACCCGGCCCCCGAATCCTTCTTTCCTCTATTT
TGTTTTTCATTTTCCCTCCTCCTCCCTCTCCCCTTACCCTTTCCCCTTCCAGTCCGCGAC
GACTGGCTCTTGACCCTGTTCAGGCCTCTGTGAAGGTGAGGACCAGGGCCGCCGCGGCGG
CTGAGCGGTGCGCTCTGAAATGGCCGCTGCCATGAGCTTCGTAAAATGGCGGCCGCGGGC
TCAGCTGGGGGCCGCGGCGCTGCGCTGCACTGCAGCCCAGCCGCAGCCGAGACCGTTCTT
TCCATCACTGATGGAGATGAAGGAGAAAGATAGTGTCGGGTGCTGAGACGTTTTCCTGTG
GGTGTTAGCTGAGGCGACCGCCCGGGGACGCGAGAGGAGTTCCGTGAGCGAGGGTGGACT
AAGACAGGAAGCCAGCCCCCAGCTGTGGCGGGCAGCGCGCACCAGTGACAAGGAGCCGAG
GGATAGCTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTTATCTTCAGACAAGCGACCGCGCCAGCCGCGAATCGGATCCCTATGGAGGTGGCA
TAGGCGATATCCCAGAGCTGAGAGCATCACCCGGCCCCCGAATCCTTCTTTCCTCTATTT
TGTTTTTCATTTTCCCTCCTCCTCCCTCTCCCCTTACCCTTTCCCCTTCCAGTCCGCGAC
GACTGGCTCTTGACCCTGTTCAGGCCTCTGTGAAGGTGAGGACCAGGGCCGCCGCGGCGG
CTGAGCGGTGCGCTCTGAAATGGCCGCTGCCATGAGCTTCGTAAAATGGCGGCCGCGGGC
TCAGCTGGGGGCCGCGGCGCTGCGCTGCACTGCAGCCCAGCCGCAGCCGAGACCGTTCTT
TCCATCACTGATGGAGATGAAGGAGAAAGATAGTGTCGGGTGCTGAGACGTTTTCCTGTG
GGTGTTAGCTGAGGCGACCGCCCGGGGACGCGAGAGGAGTTCCGTGAGCGAGGGTGGACT
AAGACAGGAAGCCAGCCCCCAGCTGTGGCGGGCAGCGCGCACCAGTGACAAGGAGCCGAG
GGATAGCTGGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               116-234, - strand, RNAz p=0.900759
               

               
               275-394, + strand, RNAz p=0.938568

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-234, - strand, RNAz p=0.900759
               

               
               275-394, + strand, RNAz p=0.938568

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021211, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021211, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-545, gnl|bosTau2|chr15 (26859936-26859413)
               

               
               1-545, gnl|Hg17|chr11 (10836188-10835650)
               

               
               1-545, gnl|Mm7|chr7 (107038217-107037723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-545, gnl|bosTau2|chr15 (26859936-26859413)
               

               
               1-545, gnl|Hg17|chr11 (10836188-10835650)
               

               
               1-545, gnl|Mm7|chr7 (107038217-107037723)

	116-234, - strand, RNAz p=0.900759
	275-394, + strand, RNAz p=0.938568

	1-545, gnl\|bosTau2\|chr15 (26859936-26859413)
	1-545, gnl\|Hg17\|chr11 (10836188-10835650)
	1-545, gnl\|Mm7\|chr7 (107038217-107037723)