Non-Coding RNA Search

Ss1.1-Thy1-THY010004C10.5

Sequence:


               
               ATTTATGATTAAGCTGATATTCTCTCATGTGGTGGGTGTAAGACCTTCCAAATGGAGACA
GGACACTTCCCTGTGATCCTGGATGATCAGGCATCTGTACCCCTGGAGGAATATCTCATC
CACTTTCCTAAGGAGCCTCCTTTTTTTTACCTGGGGCATGAGTGGTCCAGTCTTCCGTGG
TCTTGTCTGAAATAAAGGGAGAATCTTACCCATGTGGACACAGAGATGGGAGTATGGACA
TAAACTGTTGGTAAACTATAAGACAATCTGAAGAGTTCTTCAAATTTCAGTGACCCTGAC
CTTGAGACTGAAAACTTTCTGGACATCAGACAGAACGGGAGGACATGAGATTCTTTTCTG
GAGCTGAAAACATCCCCAGGCTCTTCTCCTGTGTGGCTCTCTGCCTCCTGTGGACAGGAC
ATGCGGAGGCCTGGATCACTCAGAGCCCAAGATACGAGATCACGGTGACAGGGGAGACAG
TGGCTCTGCAGTGTTACCAGACTTATAACCATGACTGTGTGTACTGGTACCAGCAAGACC
AGGGACACGGGCTGCGGCTGATCTTTTATACCTGTGATGTTGGCATCCTTAACAAAGAAG
AAGTCCCTAATGGGTACAATGTCTCGAGACCAAGCATGGAGGATTTCTCCCTGATCCTAG
AGTCTGTTGTCCCCTCCCGGACATCTGTGTACTTGTGTGCCAGCAGTCCTAGGACTCGAC
CTAAGGAGCGGTATTTTGGCCCAGGCACCAGGCTCACCATCATAGAGGACCTGAAGCAGG
TGAGACCACCCAAGGTGGCCGTGTTTGAACCATCGGAAGCGGAGATCTCCCGGACCCAGA
AGGCCACCCTCGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGT
GGGTGAACGGGAAGCAGGTCCAGAGCGGGGTCAGCACGGACCTTCAGCCCTACAGGGAGG
ACCCCAGCCGCAATGACTCCAGCTACTGTCTGAGCAGCCGGCTGAGGGTCACCGCCGCCT
TCTGGCACAACCCCCGCAACCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATGATTAAGCTGATATTCTCTCATGTGGTGGGTGTAAGACCTTCCAAATGGAGACA
GGACACTTCCCTGTGATCCTGGATGATCAGGCATCTGTACCCCTGGAGGAATATCTCATC
CACTTTCCTAAGGAGCCTCCTTTTTTTTACCTGGGGCATGAGTGGTCCAGTCTTCCGTGG
TCTTGTCTGAAATAAAGGGAGAATCTTACCCATGTGGACACAGAGATGGGAGTATGGACA
TAAACTGTTGGTAAACTATAAGACAATCTGAAGAGTTCTTCAAATTTCAGTGACCCTGAC
CTTGAGACTGAAAACTTTCTGGACATCAGACAGAACGGGAGGACATGAGATTCTTTTCTG
GAGCTGAAAACATCCCCAGGCTCTTCTCCTGTGTGGCTCTCTGCCTCCTGTGGACAGGAC
ATGCGGAGGCCTGGATCACTCAGAGCCCAAGATACGAGATCACGGTGACAGGGGAGACAG
TGGCTCTGCAGTGTTACCAGACTTATAACCATGACTGTGTGTACTGGTACCAGCAAGACC
AGGGACACGGGCTGCGGCTGATCTTTTATACCTGTGATGTTGGCATCCTTAACAAAGAAG
AAGTCCCTAATGGGTACAATGTCTCGAGACCAAGCATGGAGGATTTCTCCCTGATCCTAG
AGTCTGTTGTCCCCTCCCGGACATCTGTGTACTTGTGTGCCAGCAGTCCTAGGACTCGAC
CTAAGGAGCGGTATTTTGGCCCAGGCACCAGGCTCACCATCATAGAGGACCTGAAGCAGG
TGAGACCACCCAAGGTGGCCGTGTTTGAACCATCGGAAGCGGAGATCTCCCGGACCCAGA
AGGCCACCCTCGTGTGCCTGGCCACAGGCTTCTACCCCGACCACGTGGAGCTGAGCTGGT
GGGTGAACGGGAAGCAGGTCCAGAGCGGGGTCAGCACGGACCTTCAGCCCTACAGGGAGG
ACCCCAGCCGCAATGACTCCAGCTACTGTCTGAGCAGCCGGCTGAGGGTCACCGCCGCCT
TCTGGCACAACCCCCGCAACCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18693221|dbj|BAB85108.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18693221|dbj|BAB85108.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               923-1043, - strand, RNAz p=0.98394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               923-1043, - strand, RNAz p=0.98394

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-329, gnl|bosTau2|chr4 (58274140-58274472)
               

               
               1-329, gnl|Mm7|chr6 (41046298-41046632)
               


               
               414-707, gnl|bosTau2|chr4 (58275186-58275478)
               

               
               414-707, gnl|Hg17|chr7 (141739691-141739984)
               

               
               414-707, gnl|Mm7|chr6 (41052606-41052899)
               


               
               764-1043, gnl|bosTau2|chr4 (60559209-60558930)
               

               
               764-1043, gnl|Hg17|chr7 (142006219-142006498)
               

               
               764-1043, gnl|Mm7|chr6 (41469286-41469553)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-329, gnl|bosTau2|chr4 (58274140-58274472)
               

               
               1-329, gnl|Mm7|chr6 (41046298-41046632)
               


               
               414-707, gnl|bosTau2|chr4 (58275186-58275478)
               

               
               414-707, gnl|Hg17|chr7 (141739691-141739984)
               

               
               414-707, gnl|Mm7|chr6 (41052606-41052899)
               


               
               764-1043, gnl|bosTau2|chr4 (60559209-60558930)
               

               
               764-1043, gnl|Hg17|chr7 (142006219-142006498)
               

               
               764-1043, gnl|Mm7|chr6 (41469286-41469553)

	1-329, gnl\|bosTau2\|chr4 (58274140-58274472)
	1-329, gnl\|Mm7\|chr6 (41046298-41046632)

	414-707, gnl\|bosTau2\|chr4 (58275186-58275478)
	414-707, gnl\|Hg17\|chr7 (141739691-141739984)
	414-707, gnl\|Mm7\|chr6 (41052606-41052899)

	764-1043, gnl\|bosTau2\|chr4 (60559209-60558930)
	764-1043, gnl\|Hg17\|chr7 (142006219-142006498)
	764-1043, gnl\|Mm7\|chr6 (41469286-41469553)