Non-Coding RNA Search

Ss1.1-Thy1-THY010006B11.5

Sequence:


               
               CTTTTTTTAAAAAATAGCAGTTTGTAGTATTTTAAAGAAAGAAAAATCACATTCTAAATA
TGACTGAGCTTGATTTTTGTGTTGTACAGATCTGCATAATCATGGCAATTTATTTTTCTG
AGCATGCTATATAAACTTGAATTTCTTATGTATTTTTATTGTGGTGTTTTAAATGTGGGG
AGGGAATTGAGCATTTTTTTAGGGGGAAAAAATATTGTATGCTGTAGTGGTCTCACACGG
GCCTCTGATGTAGCTGGCAGGCCAGGTTTTCTGAAGAGCAAAATCACCTTTGGACCCTTT
GATGAGAGCTCGGACTCCCCATCAGCATTATGGAGCTGGGCCTCTTGGGGGAGGCCGAAG
CCTGAGCCTGCCTGGCAGAGCTCCCCCACCTCTACCTCCTTACCCTCCGCAGGCAGGTGG
GCAGGGCAGAGGGAATCCCCACCTTCTCAGACTGGCCCCAGGACCTCCCATTAGGGCCCT
AGGCTGTGCAGTTGGAAATGACGGCCATCAGGTTATTTCCTGGCCCTCAGCCTGCGGAGG
TGGAAGAAGCCTCCATCTAGCCCACCTTGTAAGACTGGTTCTCCTTCCTCCTCCCCCTGC
CTCCCTCGTGAGGTCTTTCTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTTTAAAAAATAGCAGTTTGTAGTATTTTAAAGAAAGAAAAATCACATTCTAAATA
TGACTGAGCTTGATTTTTGTGTTGTACAGATCTGCATAATCATGGCAATTTATTTTTCTG
AGCATGCTATATAAACTTGAATTTCTTATGTATTTTTATTGTGGTGTTTTAAATGTGGGG
AGGGAATTGAGCATTTTTTTAGGGGGAAAAAATATTGTATGCTGTAGTGGTCTCACACGG
GCCTCTGATGTAGCTGGCAGGCCAGGTTTTCTGAAGAGCAAAATCACCTTTGGACCCTTT
GATGAGAGCTCGGACTCCCCATCAGCATTATGGAGCTGGGCCTCTTGGGGGAGGCCGAAG
CCTGAGCCTGCCTGGCAGAGCTCCCCCACCTCTACCTCCTTACCCTCCGCAGGCAGGTGG
GCAGGGCAGAGGGAATCCCCACCTTCTCAGACTGGCCCCAGGACCTCCCATTAGGGCCCT
AGGCTGTGCAGTTGGAAATGACGGCCATCAGGTTATTTCCTGGCCCTCAGCCTGCGGAGG
TGGAAGAAGCCTCCATCTAGCCCACCTTGTAAGACTGGTTCTCCTTCCTCCTCCCCCTGC
CTCCCTCGTGAGGTCTTTCTCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               329-435, - strand, RNAz p=0.798739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-435, - strand, RNAz p=0.798739

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-435, gnl|bosTau2|chr5 (33700463-33700893)
               

               
               5-435, gnl|Hg17|chr9 (33102753-33102309)
               

               
               5-435, gnl|Mm7|chr4 (40944954-40944530)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-435, gnl|bosTau2|chr5 (33700463-33700893)
               

               
               5-435, gnl|Hg17|chr9 (33102753-33102309)
               

               
               5-435, gnl|Mm7|chr4 (40944954-40944530)

	5-435, gnl\|bosTau2\|chr5 (33700463-33700893)
	5-435, gnl\|Hg17\|chr9 (33102753-33102309)
	5-435, gnl\|Mm7\|chr4 (40944954-40944530)