Non-Coding RNA Search

Ss1.1-Thy1-THY010014C04.5

Sequence:


               
               ATGTGCTTTGTTATTATACACTTAAAAATAGTGGTTTCAGGTGAATTGGAGGTGGAATTT
TAAAATGCGATTTCCTGTTTTTAGGAAGTTAGTCATGTTTCATTGTAAAATTCCTTGGTC
TTTTTAAAACCAAATAGGAAAAAGAGTCTTGAGAAAAACCTGCAAAGTCTTATAACTCTA
ATGGAGTACTATTCCAAAGAAGCCTTAGGTGATTCCAAGTCTAAGAAGTCAGTAGCTTAT
AATTATGCATGCATACTTATTTTGGTGGTGGTTCAGTCTTCCAGTGATGTCCAAATGCTA
GAACAGCATGCAGCATCTCTCTTGAAGCTTTGTAAAGCAGATGAAAATAATGCTAAATTG
CAAGAACTTGGCAAGTGGCTTGAACCTCTGAAAAACCTTAGATTTGAAATTAACTGCATC
CCAAACCTAATTGAATATGTTAAACAGAATATTGATAACTTGATGACCCCAGAAGGAGTT
GGCCTTACCACTGCCTTACGTGTTCTCTGTAATGTGGCATGCCCACCACCCCCTGTTGAA
GGTCAACAGAAAGACCTGAAATGGAATCTTGCTGTTATTCAGCTTTTTTCTGCTGAAGGA
ATGGACACCTTTATTCGGGTGCTGCAAAAATTGAACAGTATTCTGACTCAGCCTTGGAGG
CTCCATGTCAACATGGGGACTACCCTTCACAGAGTTACTACTATTTCAATGGCTCGCTGC
ACACTCACTCTTCTTAAAACTATGTTAACGGAACTCCTGAGAGGTGGATCCTTTGAGTTT
AGGGACATGCGTGTTCCTTCAGCACTTGTGACTTTACACATGCTCCTGTGCTCTATCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGCTTTGTTATTATACACTTAAAAATAGTGGTTTCAGGTGAATTGGAGGTGGAATTT
TAAAATGCGATTTCCTGTTTTTAGGAAGTTAGTCATGTTTCATTGTAAAATTCCTTGGTC
TTTTTAAAACCAAATAGGAAAAAGAGTCTTGAGAAAAACCTGCAAAGTCTTATAACTCTA
ATGGAGTACTATTCCAAAGAAGCCTTAGGTGATTCCAAGTCTAAGAAGTCAGTAGCTTAT
AATTATGCATGCATACTTATTTTGGTGGTGGTTCAGTCTTCCAGTGATGTCCAAATGCTA
GAACAGCATGCAGCATCTCTCTTGAAGCTTTGTAAAGCAGATGAAAATAATGCTAAATTG
CAAGAACTTGGCAAGTGGCTTGAACCTCTGAAAAACCTTAGATTTGAAATTAACTGCATC
CCAAACCTAATTGAATATGTTAAACAGAATATTGATAACTTGATGACCCCAGAAGGAGTT
GGCCTTACCACTGCCTTACGTGTTCTCTGTAATGTGGCATGCCCACCACCCCCTGTTGAA
GGTCAACAGAAAGACCTGAAATGGAATCTTGCTGTTATTCAGCTTTTTTCTGCTGAAGGA
ATGGACACCTTTATTCGGGTGCTGCAAAAATTGAACAGTATTCTGACTCAGCCTTGGAGG
CTCCATGTCAACATGGGGACTACCCTTCACAGAGTTACTACTATTTCAATGGCTCGCTGC
ACACTCACTCTTCTTAAAACTATGTTAACGGAACTCCTGAGAGGTGGATCCTTTGAGTTT
AGGGACATGCGTGTTCCTTCAGCACTTGTGACTTTACACATGCTCCTGTGCTCTATCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61818911|ref|XP_595372.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818911|ref|XP_595372.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               578-737, - strand, RNAz p=0.940511

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-737, - strand, RNAz p=0.940511

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-364, gnl|bosTau2|chr19 (35117724-35118089)
               

               
               1-364, gnl|Hg17|chr8 (95599557-95599192)
               

               
               1-364, gnl|Mm7|chr4 (11447430-11448406)
               


               
               539-840, gnl|bosTau2|chr19 (35125504-35125805)
               

               
               539-840, gnl|Hg17|chr8 (95593136-95592835)
               

               
               539-840, gnl|Mm7|chr4 (11453739-11454040)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-364, gnl|bosTau2|chr19 (35117724-35118089)
               

               
               1-364, gnl|Hg17|chr8 (95599557-95599192)
               

               
               1-364, gnl|Mm7|chr4 (11447430-11448406)
               


               
               539-840, gnl|bosTau2|chr19 (35125504-35125805)
               

               
               539-840, gnl|Hg17|chr8 (95593136-95592835)
               

               
               539-840, gnl|Mm7|chr4 (11453739-11454040)

	1-364, gnl\|bosTau2\|chr19 (35117724-35118089)
	1-364, gnl\|Hg17\|chr8 (95599557-95599192)
	1-364, gnl\|Mm7\|chr4 (11447430-11448406)

	539-840, gnl\|bosTau2\|chr19 (35125504-35125805)
	539-840, gnl\|Hg17\|chr8 (95593136-95592835)
	539-840, gnl\|Mm7\|chr4 (11453739-11454040)