Non-Coding RNA Search

Ss1.1-Thy1-THY010015C03.5

Sequence:


               
               ACACAAAGGCTGCCGCTACCACCGGAGGAAGGGCTGCTCCTCATCCACCTGTAAGTACCA
GGGCCTAAGCCCTCCTGCCTCCTCTCCTTCCCAGCCAGGCCCCACCTGGTCCCACCCTCC
TGGGAAGAGGGCTCTCACCTGAAGACACTCCGTTGAGTCTGGAGAAAGCCTCTGAAGTCC
TTTCTGCATCCCAAGATCTCCTGTCTCTGTTCCTTCCTCAGAAGCACTCCCCCTCCCGCA
CCTCCCCCCAGCCTCTGCTCCCCCCTCCCATCTCTTTTACATTCGTTTCCCACTGGAGAG
AGGAAAAGGAGGAAGGGGATGCCTGAGTGCTAGCATTTGCCTGCTGCCCAGCATTTGCCT
GCTGCCCCGGTGCCAAGGATTACAAGACCATGGTGGCTTTGTCAATTGTCCTGGTTTTCC
TGCTGGCCCTGAGCAGAGGCGAGAGTGAGCTGGACGCCAAGACCTCATCCCCACAGGAGG
CCACACAACGGGGGAGTCCTGATCTGTCCCTACCAGGGTCCTGCCAGCCAGCTCCCTCCT
GCCAGAAATGCATCCTCTCACACCCAAGCTGCGCGTGGTGCAAGCAACTGAACTTCACTG
CGTCCGGGTCCGCTTCCGCCGAGCCGAGGGATACCCGGTGGACCTGTACTACCTTATGGA
TCTGAGCTACTCCATGAAGGATGACCTGGAGCGCGTGCGTCAGCTGGGGCACGCGCTGCT
GGTGCGACTGCANGAGGTCACCCACTCTGTGCGCATCGGCTTTGGCTCCTTTGTGGACAA
AACAGTGCTGCCCTTCGTGAGCACAGTGCCCTCCAAGCTTCGCCACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAAAGGCTGCCGCTACCACCGGAGGAAGGGCTGCTCCTCATCCACCTGTAAGTACCA
GGGCCTAAGCCCTCCTGCCTCCTCTCCTTCCCAGCCAGGCCCCACCTGGTCCCACCCTCC
TGGGAAGAGGGCTCTCACCTGAAGACACTCCGTTGAGTCTGGAGAAAGCCTCTGAAGTCC
TTTCTGCATCCCAAGATCTCCTGTCTCTGTTCCTTCCTCAGAAGCACTCCCCCTCCCGCA
CCTCCCCCCAGCCTCTGCTCCCCCCTCCCATCTCTTTTACATTCGTTTCCCACTGGAGAG
AGGAAAAGGAGGAAGGGGATGCCTGAGTGCTAGCATTTGCCTGCTGCCCAGCATTTGCCT
GCTGCCCCGGTGCCAAGGATTACAAGACCATGGTGGCTTTGTCAATTGTCCTGGTTTTCC
TGCTGGCCCTGAGCAGAGGCGAGAGTGAGCTGGACGCCAAGACCTCATCCCCACAGGAGG
CCACACAACGGGGGAGTCCTGATCTGTCCCTACCAGGGTCCTGCCAGCCAGCTCCCTCCT
GCCAGAAATGCATCCTCTCACACCCAAGCTGCGCGTGGTGCAAGCAACTGAACTTCACTG
CGTCCGGGTCCGCTTCCGCCGAGCCGAGGGATACCCGGTGGACCTGTACTACCTTATGGA
TCTGAGCTACTCCATGAAGGATGACCTGGAGCGCGTGCGTCAGCTGGGGCACGCGCTGCT
GGTGCGACTGCANGAGGTCACCCACTCTGTGCGCATCGGCTTTGGCTCCTTTGTGGACAA
AACAGTGCTGCCCTTCGTGAGCACAGTGCCCTCCAAGCTTCGCCACCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-143, - strand, RNAz p=0.989326

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-143, - strand, RNAz p=0.989326

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-247, gnl|bosTau2|chr5 (19208477-19208741)
               

               
               1-247, gnl|Hg17|chr12 (51887302-51887047)
               

               
               1-247, gnl|Mm7|chr15 (102218063-102217820)
               


               
               379-590, gnl|bosTau2|chr5 (19214218-19214428)
               

               
               379-590, gnl|Hg17|chr12 (51880504-51880294)
               

               
               379-590, gnl|Mm7|chr15 (102213765-102213555)
               


               
               603-759, gnl|bosTau2|chr5 (19216473-19216629)
               

               
               603-759, gnl|Hg17|chr12 (51877699-51877543)
               

               
               603-759, gnl|Mm7|chr15 (102210614-102210458)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr5 (19208477-19208741)
               

               
               1-247, gnl|Hg17|chr12 (51887302-51887047)
               

               
               1-247, gnl|Mm7|chr15 (102218063-102217820)
               


               
               379-590, gnl|bosTau2|chr5 (19214218-19214428)
               

               
               379-590, gnl|Hg17|chr12 (51880504-51880294)
               

               
               379-590, gnl|Mm7|chr15 (102213765-102213555)
               


               
               603-759, gnl|bosTau2|chr5 (19216473-19216629)
               

               
               603-759, gnl|Hg17|chr12 (51877699-51877543)
               

               
               603-759, gnl|Mm7|chr15 (102210614-102210458)

	1-247, gnl\|bosTau2\|chr5 (19208477-19208741)
	1-247, gnl\|Hg17\|chr12 (51887302-51887047)
	1-247, gnl\|Mm7\|chr15 (102218063-102217820)

	379-590, gnl\|bosTau2\|chr5 (19214218-19214428)
	379-590, gnl\|Hg17\|chr12 (51880504-51880294)
	379-590, gnl\|Mm7\|chr15 (102213765-102213555)

	603-759, gnl\|bosTau2\|chr5 (19216473-19216629)
	603-759, gnl\|Hg17\|chr12 (51877699-51877543)
	603-759, gnl\|Mm7\|chr15 (102210614-102210458)